| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,311,889 – 1,311,940 |
| Length | 51 |
| Max. P | 0.947850 |
| Location | 1,311,889 – 1,311,940 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 60.98 |
| Shannon entropy | 0.63687 |
| G+C content | 0.42088 |
| Mean single sequence MFE | -10.97 |
| Consensus MFE | -3.83 |
| Energy contribution | -3.70 |
| Covariance contribution | -0.13 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.16 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.53 |
| SVM RNA-class probability | 0.947850 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1311889 51 + 3288761 CUGACAUUUAAGAUCACCUGAUCUUGUCGAAAUUUCCAACUUAUAACUAUU .(((((....(((((....))))))))))...................... ( -8.10, z-score = -2.67, R) >droVir3.scaffold_12958 2960233 51 + 3547706 CUGAGAUUUUAGCUCGGCAAGCCGAGCCCGAAUUCCGGAUUUAUGAUCGCU (((..((((..((((((....))))))..))))..)))............. ( -17.40, z-score = -2.17, R) >droSim1.chr2h_random 2953134 50 + 3178526 CUGAUAAAUAGGAUCUCCUGGUCCUCGCCGCUCUACUU-CUUGUAAUCAUU .((((....((((((....))))))........(((..-...))))))).. ( -8.90, z-score = -1.48, R) >droYak2.chrU 2673883 50 - 28119190 CUGAUAAUUAGGAUCUCCUGAUCCUCGCCGCUCUACUU-CUUGUAAUCAUU .((((....((((((....))))))........(((..-...))))))).. ( -9.50, z-score = -2.33, R) >consensus CUGAUAAUUAAGAUCUCCUGAUCCUCGCCGAACUACUU_CUUAUAAUCAUU .........((((((....)))))).......................... ( -3.83 = -3.70 + -0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:41 2011