| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,309,582 – 1,309,651 |
| Length | 69 |
| Max. P | 0.567521 |
| Location | 1,309,582 – 1,309,651 |
|---|---|
| Length | 69 |
| Sequences | 3 |
| Columns | 69 |
| Reading direction | reverse |
| Mean pairwise identity | 71.98 |
| Shannon entropy | 0.39798 |
| G+C content | 0.51107 |
| Mean single sequence MFE | -18.33 |
| Consensus MFE | -10.38 |
| Energy contribution | -10.17 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567521 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1309582 69 - 3288761 AGCGGGUCAAAGAACCCACAUUUUAGUAGGCAGCACAAGCAGCAAGGCCAUUCCGGCCAGUGAAAUGCC ...((((......)))).(((((((.(..((.((....)).))..((((.....))))).))))))).. ( -21.20, z-score = -2.12, R) >droEre2.scaffold_4929 21053788 59 - 26641161 AGUGGGUCAAAGAACCC-CAUUUUAACAGACAGCACAAACAACAGGGCCAGUUUGGUGCU--------- .(.((((......))))-)............(((((((((..........)))).)))))--------- ( -11.90, z-score = 0.36, R) >droYak2.chr2L_random 2211635 67 + 4064425 AGUGGGU--AAGAACCUACAUUUUAGUAGGCAGCACAAGCAGCAAGGCCAAUACGGCCAGCGAAACGCC .((((((--....)))))).........(((.((....)).((..((((.....)))).)).....))) ( -21.90, z-score = -2.95, R) >consensus AGUGGGUCAAAGAACCCACAUUUUAGUAGGCAGCACAAGCAGCAAGGCCAAUACGGCCAG_GAAA_GCC .((((((......))))...............((....)).))..((((.....))))........... (-10.38 = -10.17 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:41 2011