| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,290,443 – 1,290,534 |
| Length | 91 |
| Max. P | 0.545429 |
| Location | 1,290,443 – 1,290,534 |
|---|---|
| Length | 91 |
| Sequences | 7 |
| Columns | 100 |
| Reading direction | reverse |
| Mean pairwise identity | 62.43 |
| Shannon entropy | 0.71083 |
| G+C content | 0.48415 |
| Mean single sequence MFE | -29.09 |
| Consensus MFE | -7.78 |
| Energy contribution | -7.57 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.68 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.545429 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1290443 91 - 3288761 CGAGUGAGAGCGAAGCGAGUUGCGAGUACAAGCGAUAAAGCGAGAGGAAAGCGAGAGAGCAGU-UUGCAGCCUGCUUUAUCGCUUCAACUCG-------- (((((..((((((((((.((((((((.....((......)).........((......))..)-))))))).))))...))))))..)))))-------- ( -32.80, z-score = -2.09, R) >droEre2.scaffold_4784 1988905 80 + 25762168 UGAGUGAGAGCGAAUCGAGUUGCGAGCUCAAGCGAU-----------AAAGCGAGAGAUCAGC-UUGCAGCCUGGUUUAUCGCAUCAACUCG-------- .((((((..((((((((.((((((((((...((...-----------...))((....)))))-))))))).))))...)))).)).)))).-------- ( -30.70, z-score = -2.39, R) >droYak2.chrU 25957175 91 + 28119190 AGAGUGAGAGCGAGGCGAGUAGCGUGCUCAAGCGAUAAAGCGAGAGCAAAGCGAGAGAGCAUU-UUGCAACCUGCUUUAUCGCUUCAACUCG-------- .((((..((((((...((((((.((((((..((......))..))))...((((((.....))-)))).))))))))..))))))..)))).-------- ( -37.80, z-score = -3.19, R) >droSim1.chrU 2968608 80 - 15797150 AGAGUGAGAGCGAAGCGAGUUGCGAGCUCAAGCGAU-----------AAAACGAGAGUGCAGU-UUGCAACCUGCUUAAUUGAUUCAACUCG-------- .(((((((....(((((.((((((((((((..((..-----------....))....)).)))-))))))).)))))......))).)))).-------- ( -26.60, z-score = -2.17, R) >droPer1.super_10 2119827 91 - 3432795 CAAGUUAUAGCGAAGAGAGCAACGAGUGCAAGCAAUAAAUCGAAAGCGAAGCAAGAGAGUAGCAUUGCAA-AUGUCUUAUCGCUUGAUCUCG-------- .........((.......))..((((..(((((.((((..((...((((.((.........)).))))..-.))..)))).)))))..))))-------- ( -20.00, z-score = -0.07, R) >droWil1.scaffold_181154 950339 93 - 4610121 AGAGUGCAAGCGAAGCGAGAAGAGAGCGACA-----AGUUGAAGCGAGUUGCGAGAAAGCGAUUCUGAA--UCGCUUUCUCGCUUUAUCGCUUUAUCUAA (((((....))(((((((..((((.(((((.-----.((....))..)))))(((((((((((.....)--)))))))))).)))).))))))).))).. ( -35.70, z-score = -2.14, R) >droMoj3.scaffold_6541 1553462 90 - 2543558 AGACUGCAAGCGAAGCGGGGAGAGAGCCAAAACGAGAAGUAAAGCGAGUUGCGAGAAAGCAUUCCUGAA--UCGUUUUCACGUUUUAUGGUA-------- ((((((.((((((..((((((....((....((.....))...))....(((......)))))))))..--)))))).)).)))).......-------- ( -20.00, z-score = 0.34, R) >consensus AGAGUGAGAGCGAAGCGAGUAGCGAGCUCAAGCGAUAAAUCGAGAG_AAAGCGAGAGAGCAGU_UUGCAACCUGCUUUAUCGCUUCAACUCG________ .(((((((.((..............)).......................((((.((((((...........)))))).)))))))).)))......... ( -7.78 = -7.57 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:40 2011