| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,280,760 – 1,280,840 |
| Length | 80 |
| Max. P | 0.526392 |
| Location | 1,280,760 – 1,280,840 |
|---|---|
| Length | 80 |
| Sequences | 6 |
| Columns | 80 |
| Reading direction | forward |
| Mean pairwise identity | 62.15 |
| Shannon entropy | 0.73453 |
| G+C content | 0.39983 |
| Mean single sequence MFE | -15.55 |
| Consensus MFE | -5.22 |
| Energy contribution | -6.45 |
| Covariance contribution | 1.23 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.13 |
| Structure conservation index | 0.34 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.526392 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1280760 80 + 3288761 ACGGGAUCGCCUGCGUUACAAUUGUCGGUCUGCAAACCUUUAUUCUGUAGGCGGUAAACACUGACUUGUUGCCUAAUUUU ..((((((((((((...((....)).(((......)))........))))))))).((((......)))).)))...... ( -18.40, z-score = -0.56, R) >droSim1.chrU 11705420 80 - 15797150 ACGGAAUCGCCUGCUUAACAGUUGUCGGUCUGCAAGCCUUUAUUCUGUAGGUGAUAAGCAACAACUUGAUGUUUGAUUUU .....(((((((((...((....)).(((......)))........)))))))))(((((.(.....).)))))...... ( -15.40, z-score = 0.45, R) >droSec1.super_76 52760 76 + 142355 ACGGAAUCUCCUGCUUAACAAUUGUC----UGCAAACCUUUAUUCUGUAGGCGAUAAGCACUAACUUGUUGCUUAAUUUU .((((((....(((...((....)).----.))).......))))))(((((((((((......)))))))))))..... ( -16.80, z-score = -2.55, R) >droEre2.scaffold_4929 5472087 79 - 26641161 ACGAAAUCGCCUGUUUAACAAUUGUCGGUCUGCUUAACUUUACGCUGUUGGCGAUAAACACUGACUUGUUGUUAUUAUU- ...............(((((((.((((((.((((.(((........)))))))......))))))..))))))).....- ( -14.90, z-score = -0.87, R) >droYak2.chrU 21052721 66 - 28119190 ACAGAAUCACCUGCCUAACAAUUAUCGGUCUGCAAACCUUUAUUUGGUAGGUGAUAAACACUGACU-------------- .(((.((((((((((.......((..(((......)))..))...)))))))))).....)))...-------------- ( -17.90, z-score = -3.39, R) >droWil1.scaffold_181154 807719 71 - 4610121 GCAAAAUCACGACCGUCACGUUAGAGAG--CAGAAGCUUUUCUUUAACAGUAAAGACCUAGUUAAUUAAGCUG------- ..............((((((((((((((--(....))...)))))))).))...))).(((((.....)))))------- ( -9.90, z-score = 0.16, R) >consensus ACGGAAUCGCCUGCUUAACAAUUGUCGGUCUGCAAACCUUUAUUCUGUAGGCGAUAAACACUGACUUGUUGUUU_AUUU_ .....(((((((((................................)))))))))......................... ( -5.22 = -6.45 + 1.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:39 2011