| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,134,331 – 1,134,440 |
| Length | 109 |
| Max. P | 0.961126 |
| Location | 1,134,331 – 1,134,440 |
|---|---|
| Length | 109 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | forward |
| Mean pairwise identity | 67.86 |
| Shannon entropy | 0.44275 |
| G+C content | 0.36091 |
| Mean single sequence MFE | -23.42 |
| Consensus MFE | -13.84 |
| Energy contribution | -11.97 |
| Covariance contribution | -1.87 |
| Combinations/Pair | 1.45 |
| Mean z-score | -2.06 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.69 |
| SVM RNA-class probability | 0.961126 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1134331 109 + 3288761 ---GACGACGAAAGAACCACAUUGCUUAACACAGAGGUUAGGGAUGAUGCCCUAAAUGUAUUUAUUACAGGUCUAAAAAAAUCCCUAAGGGCUGUUGUGUUUCCAGCACAGC ---.....(....)........((((.(((((((.((((((((((...........((((.....))))...........)))))))...))).)))))))...)))).... ( -26.45, z-score = -1.07, R) >dp4.chrXL_group1a 710475 112 + 9151740 AAGGACAGUGAAGUUACCAAAGAAUCUAAUAACAAAAUUAGACAGAAUGCCUUACGCAUUUUUAUCACAGGCCUAAACGGAAACAUUUCGGAAAUUUUGUUCUCAUUAAAUC .((((((((((.............((((((......)))))).(((((((.....)))))))..))))...((.(((.(....).))).))......))))))......... ( -21.40, z-score = -2.06, R) >droPer1.super_62 140459 112 + 349094 AAGGACAGUGAAGUUACCAAAGAAUCUAAUAACAAAAUUAGACAGAAUGCCUUACGCAUUUUUAUCACAGGCCUAAACGGCAACAUUUCGGAAAUUUUAUUCUCAUUAAAUC ...((.(((((((((.((...((.((((((......)))))).(((((((.....)))))))..))....(((.....)))........)).))))))))).))........ ( -22.40, z-score = -3.07, R) >consensus AAGGACAGUGAAGUUACCAAAGAAUCUAAUAACAAAAUUAGACAGAAUGCCUUACGCAUUUUUAUCACAGGCCUAAACGGAAACAUUUCGGAAAUUUUGUUCUCAUUAAAUC ...((.(((((((((.((......((((((......))))))......(((..................))).................)).))))))))).))........ (-13.84 = -11.97 + -1.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:36 2011