| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,133,939 – 1,134,006 |
| Length | 67 |
| Max. P | 0.898929 |
| Location | 1,133,939 – 1,134,006 |
|---|---|
| Length | 67 |
| Sequences | 4 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 61.11 |
| Shannon entropy | 0.63290 |
| G+C content | 0.45740 |
| Mean single sequence MFE | -14.80 |
| Consensus MFE | -5.66 |
| Energy contribution | -7.35 |
| Covariance contribution | 1.69 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.80 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.898929 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1133939 67 + 3288761 GGGAGCAACACCGUGUGAUACACCUUUACACAUUGUGAGGUCAAUUCCAGAAUUUACUGGUAUGCAG ....(((..(((((((((.......))))))...(((((.((.......)).))))).))).))).. ( -14.90, z-score = -0.33, R) >droSim1.chr3h_random 1371577 61 - 1452968 GGGAGCACCACAGUGCGAAACACCUUUACACAUAGUAAAGUCC------GAUUUUACUGGCAUUCGG .(((((((....)))).......((((((.....)))))))))------.................. ( -12.50, z-score = -1.09, R) >droSec1.super_1485 1510 61 - 5433 GGGAGCACCACCGUGCGAAACACCUUUACACAUAGUAAAGUCC------GAUUUUACUGGCAUUCAG .(((((((....)))).......((((((.....)))))))))------.......(((.....))) ( -12.70, z-score = -1.47, R) >droWil1.scaffold_181141 4173577 58 - 5303230 --CAGCAUUA-GAUAUGAGGUUAGAUUGGACACUGCGAAAGCGGUGCCGAAUUUUAAUGGU------ --...(((((-((((......))..((((.((((((....))))))))))..)))))))..------ ( -19.10, z-score = -4.30, R) >consensus GGGAGCACCACCGUGCGAAACACCUUUACACAUAGUAAAGUCC______GAUUUUACUGGCAUUCAG ....((......((((((.......)))))).((((((((((.......))))))))))))...... ( -5.66 = -7.35 + 1.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:35 2011