| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,124,252 – 1,124,361 |
| Length | 109 |
| Max. P | 0.801932 |
| Location | 1,124,252 – 1,124,361 |
|---|---|
| Length | 109 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 53.87 |
| Shannon entropy | 0.76370 |
| G+C content | 0.44915 |
| Mean single sequence MFE | -32.85 |
| Consensus MFE | -9.29 |
| Energy contribution | -10.10 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1124252 109 + 3288761 AUAAUAAUGCCUUAAAAUUUGU-UGAUGAUAUUCAUUCAGUGCAAACAAUAGUUGUCCGCCUGGCGCAACUACAGGAAAAUUAUUUGCGGUUCGUACGGCUCUCGGAAGA ........(((.((....((((-.((((((.(((.....((....))..(((((((((....)).)))))))...))).)))))).))))....)).)))..((....)) ( -22.80, z-score = 0.17, R) >droWil1.scaffold_181145 1592299 105 + 2682060 AUAACAAGAAUUCUGGAUUGGUCC--CAAACUACAUCAACUACUGA-GGUAGCCGCUCGGAUGGAUCAACUCCAGUCCGUGUGGAAGGAAUUUAAUGGAAUCGGGGAU-- .........(((((.((((....(--((..((((.(((.....)))-.))))((((.((((((((.....)))).)))).))))...........))))))).)))))-- ( -30.00, z-score = -0.87, R) >droPer1.super_72 229679 109 - 283643 CUGCGGAGGCUCAAGAGUUUGUACAGCCAUGUAC-UUCUGUGCAAACAUUAGAGCACAAGUUGGACCGACUUGUUGCAACUUUCAACCGCUUUAUGGAGCUGUCCGAAGA ((.(((((((((....((((((((((........-..))))))))))......((((((((((...))))))).)))...................))))).)))).)). ( -36.10, z-score = -2.09, R) >dp4.Unknown_group_6 59506 109 - 78653 CUACGGAGGCUCAAGAGUUUGCACAGUCAUGUAC-UUCUGUGCAAACAUUAGAGCACAAGUUGGACCGACUGGUUGCAACUUUCAACCGCUUUAUGGAGCUCUCUGAAGA ((.(((((((((....((((((((((........-..))))))))))..((((((...(((((...)))))(((((.......)))))))))))..)))).))))).)). ( -42.50, z-score = -4.12, R) >consensus AUAAGAAGGCUCAAGAAUUUGUACAGCCAUGUAC_UUCAGUGCAAACAUUAGAGCACAAGUUGGACCAACUACAGGCAACUUUCAACCGCUUUAUGGAGCUCUCGGAAGA ....(..(((((....((((((((((...........)))))))))).......................((((((.......)))))).......)))))..)...... ( -9.29 = -10.10 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:34 2011