Locus 2870

Sequence ID dm3.chr2RHet
Location 1,123,093 – 1,123,205
Length 112
Max. P 0.544736
window3956

overview

Window 6

Location 1,123,093 – 1,123,205
Length 112
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 54.12
Shannon entropy 0.65743
G+C content 0.44758
Mean single sequence MFE -31.64
Consensus MFE -11.69
Energy contribution -9.15
Covariance contribution -2.54
Combinations/Pair 1.72
Mean z-score -1.25
Structure conservation index 0.37
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.10
SVM RNA-class probability 0.544736
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 1123093 112 - 3288761
UAAAGCCUUUGAUCCAAGUAUCCGUUUC--AUAUGGAGUUUAAUUGAGCGAACUCCAGCUUCCCACAUCCCUCCAAAAUGGGGAGCAGACGGGGGUAUAAAGUGCCAAGAAAUC
....(((((((((((......((((((.--...((((((((........))))))))((((((((.............)))))))))))))))))).))))).))......... ( -35.02, z-score =  -2.59, R)
>apiMel3.GroupUn 265390425 111 + 399230636
CAAUAUCGUU-UCCCGAUUACUCGCUUU--AGAUGAGUUUUUGCUGACUUAAUAGAGCUCUCUUACAAAUUCCCAAAAUGAGGUGUACGAGGAGGGAUUAUGUGCCAUUGUAUU
((((..(((.-((((........(((((--(..((((((......)))))).))))))((((.((((..((........))..)))).)))).))))..)))....)))).... ( -25.40, z-score =  -0.93, R)
>triCas2.chrUn_298 5936 114 + 21235
GAGGAUUUGCUCUCCUAUAAGACGAUGUAAAAAUGGGUUUUGACCGACUUAAUGCCGGCCUCCCAAAUCCCUCCAAAGUGAGGGGCUGAUGGGGGGUUUCAAUGCCACCGAAGA
..((.(((((((((......)).)).)))))....(((.(((((((.(.....).)))(((((((..((((((......))))))....)))))))..)))).))).))..... ( -34.50, z-score =  -0.23, R)
>consensus
CAAAAUCUUU_AUCCAAUUACACGAUUU__AAAUGGGUUUUAACUGACUUAAUACCGGCCUCCCACAUCCCUCCAAAAUGAGGAGCAGAAGGGGGGAUUAAGUGCCAACGAAUA
......(((..((((..................(.((......)).)..........((((((((.............))))))))......))))...)))............ (-11.69 =  -9.15 +  -2.54)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:33 2011