| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,078,668 – 2,078,769 |
| Length | 101 |
| Max. P | 0.530890 |
| Location | 2,078,668 – 2,078,769 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 109 |
| Reading direction | reverse |
| Mean pairwise identity | 81.27 |
| Shannon entropy | 0.33128 |
| G+C content | 0.59202 |
| Mean single sequence MFE | -38.00 |
| Consensus MFE | -26.94 |
| Energy contribution | -27.70 |
| Covariance contribution | 0.76 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.530890 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2078668 101 - 23011544 CUUGAGCCCCUCCAACGGGCCAAAGGAUUCGGACCGCCUUUGAUGGCU--------GAUACCCUGAUGGGCUGAUGGUCUGAUGAUGGCUGCGCCUGAUUAGCCGCCCG .(((.((((.......))))))).((..((((((((((......))).--------....(((....))).....)))))))....(((((........)))))..)). ( -35.90, z-score = -1.53, R) >droSim1.chr2L 2049503 109 - 22036055 CUUGAGCCCCUCCAACGGGCCAAAGGAUUCGGACCGCCUUUGAUGGCUGAUAGCCUGAUGGGCUGACGGUCUGAUGGUCUGAUGAUGGCUGCGCCUGAUUAGCCGCCCG .(((.((((.......))))))).((..((((((((((......)))...(((((.....)))))..))))))).((.(((((.(.(((...)))).)))))))..)). ( -42.60, z-score = -2.05, R) >droSec1.super_14 2024937 109 - 2068291 CUUGAGCCCCUCCAACGGGCCAAAGGAUUCGGACCGCCUUUGAUGGCUGAUAGCCUGACGGGCUGACGGUCUGAUGGUCUGAUGAUGGCUGCGCCUGAUUAGCCGCCCG .(((.((((.......))))))).((..((((((((((......)))...(((((.....)))))..))))))).((.(((((.(.(((...)))).)))))))..)). ( -42.60, z-score = -1.98, R) >droYak2.chr2L 2065426 109 - 22324452 CUUGAGCCCCUCCAUCGGGCCAAAGGAUUCGGACCGCCUUUGAUGGCUGAUAGCGGGAUAGCCUGAUGGGCUGAUGGGCUGAUGAUGGCUGCGCCUGAUUAGCCGCCCG ...............(((((((((((..........))))))..(((((((..((((.((((((.((.((((....)))).)).).)))))..)))))))))))))))) ( -41.80, z-score = -0.57, R) >droAna3.scaffold_12916 9795206 94 + 16180835 CUUGAGGCCGUCACUUGAGCAAAAGGAUUCUGGCCA----AAACGCCU------UUGAUGG-CUGAUGGUUUGAUGGCCUGAU----GCUUUGCCUGAUUAGCUGCCCG ...(.(((.((((...(((((..(((..((..((((----..(.(((.------.....))-))..))))..))...)))..)----))))....)))).....)))). ( -27.10, z-score = -0.61, R) >consensus CUUGAGCCCCUCCAACGGGCCAAAGGAUUCGGACCGCCUUUGAUGGCUGAUAGCCUGAUGGCCUGAUGGUCUGAUGGUCUGAUGAUGGCUGCGCCUGAUUAGCCGCCCG ...............(((((........((((((((((......)))...........(((((.....)))))..)))))))....(((((........)))))))))) (-26.94 = -27.70 + 0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:08 2011