| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,087,476 – 1,087,537 |
| Length | 61 |
| Max. P | 0.552490 |
| Location | 1,087,476 – 1,087,537 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 65 |
| Reading direction | reverse |
| Mean pairwise identity | 53.67 |
| Shannon entropy | 0.87608 |
| G+C content | 0.48009 |
| Mean single sequence MFE | -12.23 |
| Consensus MFE | -5.87 |
| Energy contribution | -6.37 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.01 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.552490 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1087476 61 - 3288761 ----UCCAAGGGAAGCAGAUUGUGGUGCUAAGAUUUGCAGGCACGACAAUUGCCGAAGAUGCACU ----(((...))).((((.((((.(((((..........))))).))))))))............ ( -15.00, z-score = -0.54, R) >droPer1.super_136 4918 52 - 89763 -------------AGAAGAGUGUGGUGCUUCGAUUGGCUAGUACGGCAGGGACUUGAUUUACAAU -------------.......(((.(((((..........))))).)))................. ( -8.20, z-score = 0.66, R) >dp4.Unknown_singleton_3888 6882 65 - 18069 UCGAAGGAAAUACAGAAGAGUGUGGUGCUGCGAUUGGCAAGUACGGCAGGGACCUGAUUUACAAU ((....))....(((.....(((.(((((((.....)).))))).))).....)))......... ( -14.90, z-score = -1.10, R) >droYak2.chrU 22551570 51 + 28119190 ----CCCAAAUGAAGCAAAGUGUGGUGCUUAAAUCCGCAGGCACGGCAA----UUGAGU------ ----...........(((..(((.((((((........)))))).))).----)))...------ ( -11.90, z-score = -0.33, R) >droSec1.super_76 40135 61 - 142355 ----UCAAAGGGAAGCAGAGCGUGGUGCUUAGAUUUGCAGGCACGACAAUUGCCGAGGAUGCACA ----((...((.((((...))((.((((((........)))))).))..)).))...))...... ( -13.80, z-score = 0.14, R) >droSim1.chr2h_random 1965766 62 - 3178526 ---UGAUCUUGAAAUCGGUUUGCUGGAUUAAGGUUCUUCUUCACGACAAUUGCCGAGGAUGCACA ---.((((((((..((((....)))).))))))))..(((((............)))))...... ( -9.60, z-score = 1.14, R) >consensus ____UCCAAAGGAAGCAGAGUGUGGUGCUUAGAUUCGCAGGCACGACAAUUGCCGAAGAUGCACU ....................(((.(((((..........))))).)))................. ( -5.87 = -6.37 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:33 2011