| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 1,084,320 – 1,084,378 |
| Length | 58 |
| Max. P | 0.889049 |
| Location | 1,084,320 – 1,084,378 |
|---|---|
| Length | 58 |
| Sequences | 5 |
| Columns | 58 |
| Reading direction | reverse |
| Mean pairwise identity | 89.31 |
| Shannon entropy | 0.19100 |
| G+C content | 0.46207 |
| Mean single sequence MFE | -15.72 |
| Consensus MFE | -11.72 |
| Energy contribution | -11.28 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.27 |
| Mean z-score | -2.35 |
| Structure conservation index | 0.75 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.889049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 1084320 58 - 3288761 AAUAGGGAAACUGAAGACCGAACCAUAGUAGAAGAGACUUGUUAUGGCGGGGGUCGUA ....((....))...((((...(((((((((.......)))))))))....))))... ( -12.80, z-score = -0.97, R) >droSim1.chr2h_random 1675809 58 + 3178526 AAAAGAGAAACUGAAGACCGCACCAUAGCAGAAAAGACUUGUUAUGGCGGGGGUAGUA .........((((....((.(.(((((((((.......))))))))).).)).)))). ( -17.60, z-score = -3.75, R) >droSec1.super_6 4242509 58 + 4358794 AAUAGAGAAACUGAAGACCGCACCAUAGCAGAAGAGACUUGUUAUGGCGGGGGUCGUU ...............((((.(.(((((((((.......)))))))))..).))))... ( -18.10, z-score = -3.18, R) >droYak2.chrU 26998022 58 + 28119190 AAUAGAGAAACUGAAAACUGCACUAUAGCAGAAGAGACUUGUUAUGGCGGGGGUCGUA ............((...((.(.(((((((((.......))))))))).).)).))... ( -12.30, z-score = -1.43, R) >droWil1.scaffold_181152 414263 58 - 917333 AAUAGGGAUACUGAUGACCGCAUCAUAGCAGAAGAGGCUUGUUAUGGCGGGAGUCGUA ........(((.(((..((((..((((((((.......))))))))))))..)))))) ( -17.80, z-score = -2.44, R) >consensus AAUAGAGAAACUGAAGACCGCACCAUAGCAGAAGAGACUUGUUAUGGCGGGGGUCGUA ...........(((...(((..(((((((((.......))))))))))))...))).. (-11.72 = -11.28 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:31 2011