| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 966,119 – 966,183 |
| Length | 64 |
| Max. P | 0.577933 |
| Location | 966,119 – 966,183 |
|---|---|
| Length | 64 |
| Sequences | 4 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 80.99 |
| Shannon entropy | 0.31411 |
| G+C content | 0.39410 |
| Mean single sequence MFE | -10.85 |
| Consensus MFE | -5.91 |
| Energy contribution | -6.60 |
| Covariance contribution | 0.69 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.08 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.577933 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 966119 64 + 3288761 UAAUUCAGAGGAAAACCCUCUUAUCACCCCAUACAUAGAAGAAGCCCUUCUAGUAACAUCCUCU ......(((((.....)))))..........(((.((((((.....)))))))))......... ( -12.80, z-score = -3.37, R) >droEre2.scaffold_4929 1357279 64 - 26641161 UGAAUCUGAGGAAAACCCUCUUAUUACCCCUUACAUAGAAGAAGCCCUUCUAGUAACAUCCUCU ..(((..((((.....))))..))).....((((.((((((.....))))))))))........ ( -12.90, z-score = -2.54, R) >droYak2.chr2h_random 1604976 54 + 3774259 ----------UGGAGCCCUCUUAUUACCCCUUACAUAGAAGAAGCCCUUUUAAUAACAUUCUCU ----------.((.((..((((................)))).))))................. ( -3.89, z-score = 0.51, R) >droSec1.super_5 5814828 64 + 5866729 UAAAUCUGAGGAAAAUUCUCUUGUUACCCCAUACAUAGAAGAAGCCCUUCUAGUAACAUCCUCU .......(((((.........((((((........((((((.....))))))))))))))))). ( -13.80, z-score = -2.93, R) >consensus UAAAUCUGAGGAAAACCCUCUUAUUACCCCAUACAUAGAAGAAGCCCUUCUAGUAACAUCCUCU .......(((((((......)).........(((.((((((.....)))))))))...))))). ( -5.91 = -6.60 + 0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:28 2011