| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 965,980 – 966,080 |
| Length | 100 |
| Max. P | 0.548519 |
| Location | 965,980 – 966,080 |
|---|---|
| Length | 100 |
| Sequences | 3 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.00 |
| Shannon entropy | 0.24794 |
| G+C content | 0.43825 |
| Mean single sequence MFE | -19.57 |
| Consensus MFE | -12.70 |
| Energy contribution | -13.37 |
| Covariance contribution | 0.67 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.548519 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 965980 100 + 3288761 ACGAGUGCCUCAGGUCAUCUAACCCAGAGGAAACCCCUCUACAUAUACAGAAAAAGGAGAAAAACCUCCAGAAAAUAAAGUGGAAACCCCAUUUAAAAUC ..(((..((((.(((......)))..))))......)))................((((......))))........((((((.....))))))...... ( -19.30, z-score = -1.83, R) >droSim1.chrU 7188744 99 + 15797150 -UGAGUGCCCCAGGUCAUCUAACGCAGAGGAAAGCCCUCUACACACACCAAAAAAGGAGAAACCCCUCAGGAAAACUAAUCGGAAACCCCACUUAAAAUC -((((((((..(((...(((...(.(((((.....))))).).....((......)))))....)))..))..........(....)..))))))..... ( -18.90, z-score = -0.98, R) >droEre2.scaffold_4929 1357116 100 - 26641161 AUGAGUACCCCAAGUCAUCUAAACCAGAGGAAACCCCUCUACAUACUCCAAAAAAGGAGAAAACCGUCCGUCAAAUUAAGCGGAAACUCCACUUAAAACC ..((((...................(((((.....))))).....((((......)))).......(((((........))))).))))........... ( -20.50, z-score = -3.12, R) >consensus AUGAGUGCCCCAGGUCAUCUAACCCAGAGGAAACCCCUCUACAUACACCAAAAAAGGAGAAAACCCUCCGGAAAAUUAAGCGGAAACCCCACUUAAAAUC .((((((.....(((..(((.....(((((.....)))))...............((((......))))............))).))).))))))..... (-12.70 = -13.37 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:27 2011