| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 939,803 – 939,909 |
| Length | 106 |
| Max. P | 0.677105 |
| Location | 939,803 – 939,909 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 57.64 |
| Shannon entropy | 0.60155 |
| G+C content | 0.46539 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -10.36 |
| Energy contribution | -9.49 |
| Covariance contribution | -0.87 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.68 |
| Structure conservation index | 0.36 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.677105 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 939803 106 + 3288761 GGUUUGUGAAGACGGUCUCAUUGACCAUGGCACUCACAAUGAAUGUUAUUAGGUGCGUUCCUUUGACGUGAAUGGCUGUUCCAUUAUCCACGAGUGCUGGUCUAUC .........((((((((.....))))..(((((((.(((.((((((........))))))..)))..((((((((.....)))))...)))))))))).))))... ( -33.90, z-score = -2.01, R) >droEre2.scaffold_4929 22532449 100 + 26641161 --UUCUGGACCACGGUCUCAUUGACCAUAGCACUCUCAGUAAAUGUUAUCAGGUGCGUGCCUCUAAUGU---UCCAUUAUCCAC-GCGAACAAGUGCUGGUCUAUC --...((((((..((((.....))))..((((((.((......((....))...(((((....(((((.---..)))))..)))-))))...)))))))))))).. ( -29.00, z-score = -2.62, R) >droMoj3.scaffold_6473 11515839 97 + 16943266 GGUUUUGGUAUACGGUGUUGUUUACCUUUAUCUUGUCGUCAAAGGUAAGGAGGAACGUCCCUUUUAC-----CAUCUGCUC----GUUGACUGUAGCUGCUCCGUC ((...(((((...((.(.(((((..(((((((((.......)))))))))..))))).)))...)))-----)).((((..----.......)))).....))... ( -23.00, z-score = -0.41, R) >consensus GGUUUUGGAACACGGUCUCAUUGACCAUAGCACUCUCAAUAAAUGUUAUCAGGUGCGUCCCUUUAACGU___UACCUGAUCCA__GUCAACAAGUGCUGGUCUAUC .............((((.....)))).((((((((.........((((..(((......))).)))).....((.............))..))))))))....... (-10.36 = -9.49 + -0.87)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:26 2011