| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 912,783 – 912,833 |
| Length | 50 |
| Max. P | 0.912577 |
| Location | 912,783 – 912,833 |
|---|---|
| Length | 50 |
| Sequences | 3 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 53.85 |
| Shannon entropy | 0.63158 |
| G+C content | 0.62667 |
| Mean single sequence MFE | -18.03 |
| Consensus MFE | -11.15 |
| Energy contribution | -12.27 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.23 |
| SVM RNA-class probability | 0.912577 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 912783 50 - 3288761 UAGCCAAAUGCAAUCCGUCUGCGCCGGCAGAGAGGCCGUCGGCAGAGACG--- ..((.....))....(((((..((((((.(.....).))))))..)))))--- ( -16.60, z-score = -0.97, R) >droAna3.scaffold_13082 545523 50 - 3919855 UAGCCAAAUGAUGCACGGUUGCGCCGGCAGAGACGCUGCCGGCUGCGCCG--- ..((........)).((((.((((((((((.....)))))))).))))))--- ( -24.50, z-score = -2.43, R) >droVir3.scaffold_13050 1306348 50 + 3426691 -AGCCUAAGGCUAAGCAGU--CCCUGGUGGCAGCGCUGCCCUUUGCAAAUAAG -((((...))))..((((.--....((..((...))..))..))))....... ( -13.00, z-score = 1.05, R) >consensus UAGCCAAAUGCUAAACGGUUGCGCCGGCAGAGACGCUGCCGGCUGCGACG___ ...............((((...((((((((.....))))))))...))))... (-11.15 = -12.27 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:25 2011