| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,078,028 – 2,078,126 |
| Length | 98 |
| Max. P | 0.560291 |
| Location | 2,078,028 – 2,078,126 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 61.94 |
| Shannon entropy | 0.67069 |
| G+C content | 0.36129 |
| Mean single sequence MFE | -23.24 |
| Consensus MFE | -6.25 |
| Energy contribution | -5.90 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.61 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.27 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560291 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2078028 98 - 23011544 UAUUUUAGUAGAUACUUCUACUUCUACGCGGGUCAAGAUACUUUUGUAUCUGUAAAGUGUGGAAGAGAUGCAAAGGGUUUGGGAGGAUUUAUUUUUCG------------- ......(((((((.(((((.(((((((((......((((((....)))))).....)))))))))((((.(...).)))).)))))))))))).....------------- ( -27.20, z-score = -2.85, R) >droSim1.chr2L 2048868 92 - 22036055 UAUUUUAGUAGA------UACUUCUGCGCGGGUCAAGAUACUUUUGUAUCUGUAAAUUGUGGAGGAGAUUUAAAGGGUUUGGGAGUACUCAUUUUUAA------------- ........((((------(.(((((.(((((....((((((....)))))).....))))).))))))))))..((((........))))........------------- ( -23.50, z-score = -2.58, R) >droSec1.super_14 2024305 92 - 2068291 UAUUUUAGUAGA------UACUUCUGCGCGGAUCAAGAUACUUUUGUAUCUGUAAACUGUGGAGGAGAUUUAAAGGGUUUGGGAGGAUUCAUUUUUAA------------- ........((((------(.(((((.(((((....((((((....)))))).....))))).))))))))))..((((((....))))))........------------- ( -24.10, z-score = -2.78, R) >droYak2.chr2L 2064768 104 - 22324452 CAUUUAAGUAGA------UACUUUUGCGCGGGUCAAGAUACUUUUGUAUCUGAAGCUGGUGAACGAG-UUUAAAGAGUUUGGGAGUUGCUGAGGUUUGGAUUCACUUUUUA .....((((...------.((((...(((.(((..((((((....))))))...))).)))...)))-).....(((((..((..((...))..))..))))))))).... ( -22.40, z-score = -0.12, R) >droEre2.scaffold_4929 2128617 104 - 26641161 CAUCUAAGUAGA------UACUUCUGCGCGGGUCAAGAUACUUUUGUAUCUGGAAAUUGUGAGCGAG-CUUAAAGAGUUUGGUAGGUGCUGUGGCUUGGAUUCACUUUUUA .((((((((...------....((((((((..((.((((((....)))))).))...)))...((((-(((...)))))))))))).......)))))))).......... ( -26.84, z-score = -0.71, R) >droAna3.scaffold_12916 9794694 75 + 16180835 CAUUUGAGAUG--------CAUUUAAAGUGCAUCUCUGUA-UCAUGUGUUUCAAUCUUGUAUCUGAG-UCUAUGUGUUUUAAAAU-------------------------- .....((((((--------(((.....)))))))))....-.((((((.((((..........))))-..)))))).........-------------------------- ( -15.40, z-score = -1.92, R) >consensus CAUUUUAGUAGA______UACUUCUGCGCGGGUCAAGAUACUUUUGUAUCUGUAAAUUGUGGACGAG_UUUAAAGGGUUUGGGAGGAGUUAUUUUUAG_____________ ....................((((((.((......((((((....))))))........((((.....))))....)).)))))).......................... ( -6.25 = -5.90 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:07 2011