| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 864,395 – 864,508 |
| Length | 113 |
| Max. P | 0.771856 |
| Location | 864,395 – 864,508 |
|---|---|
| Length | 113 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 83.22 |
| Shannon entropy | 0.30385 |
| G+C content | 0.43078 |
| Mean single sequence MFE | -28.37 |
| Consensus MFE | -14.26 |
| Energy contribution | -15.22 |
| Covariance contribution | 0.96 |
| Combinations/Pair | 1.31 |
| Mean z-score | -2.56 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.771856 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 864395 113 + 3288761 UCACACAAG--AUGUUCAGUUGCAACAAAAAAGUCGAACGAGCGUCGAUGUAUACUACUAGGAAACGCAGGUAUCACGCCACGUCCACGUUACUUUUCGUUCUUGCUUUUCCAAC ....(((.(--((((((.(((.(.((......)).)))))))))))..))).........(((((.(((((.........(((....)))...........))))).)))))... ( -24.35, z-score = -0.59, R) >droSim1.chrX 217165 113 - 17042790 UCACACAAG--AUGUUCAGUUGCGACCAAAAAGUCGAACGAACGUCAAUGUAAGCAGCGAGAAAACGAAGAUAUCACGCCAUAUCCCCGUUACUUUUCAUUCUUGCACUUCCAAC ........(--((((((.(((.((((......))))))))))))))..((((((.((.(((((((((..(((((......)))))..))))..))))).))))))))........ ( -29.00, z-score = -3.72, R) >droEre2.scaffold_4929 4567552 112 - 26641161 UCACACAAG--AUGUUCAGUUGCGACCAAAAAGUCGAACAAAUGUCGAUGUAAACUGCAAGGAAACGAAG-UAUCACACCAUUAUCCCGAUACUUUUCGUUUUUGCACUUACAAC ........(--(((((..(((.((((......))))))).))))))..(((((..((((((((...((((-((((.............))))))))...)))))))).))))).. ( -27.12, z-score = -2.83, R) >droYak2.chrYh 93928 113 + 114151 UCACACAAG--AUGUUCAGUUGCGACGAAAAAGUCGAACGAACGUCAGUGUAAACCGCAAGGAAACGAAAAUAUCGCGCCAUAUCCUCGUUACUUUUCGUUCUUGCACUUCCAAC ........(--((((((.(((.((((......))))))))))))))(((((((.((....)).((((((((....(((.........)))...)))))))).)))))))...... ( -33.10, z-score = -3.47, R) >droSec1.super_444 139 113 + 41817 UCACACAAGUUGUGUUCAGUCGGGACCAAAAAGUCGAACGAAAGUCAAUGUUAACCGCGAGGAAACGAAGAUAUCAUACCAUAUCCCCGUUACUUUUUGUCCUUGCACUUCCC-- ..((((.....))))...((.(((((.(((((((.((.(....)))........((....)).((((..(((((......)))))..)))))))))))))))).)).......-- ( -28.30, z-score = -2.21, R) >consensus UCACACAAG__AUGUUCAGUUGCGACCAAAAAGUCGAACGAACGUCAAUGUAAACCGCAAGGAAACGAAGAUAUCACGCCAUAUCCCCGUUACUUUUCGUUCUUGCACUUCCAAC ....(((....((((((.(((.((((......)))))))))))))...))).....(((((((((((..(((((......)))))..))))........)))))))......... (-14.26 = -15.22 + 0.96)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:23 2011