| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 754,048 – 754,111 |
| Length | 63 |
| Max. P | 0.892246 |
| Location | 754,048 – 754,111 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 76 |
| Reading direction | forward |
| Mean pairwise identity | 78.63 |
| Shannon entropy | 0.35575 |
| G+C content | 0.44884 |
| Mean single sequence MFE | -16.98 |
| Consensus MFE | -8.80 |
| Energy contribution | -10.80 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.46 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.11 |
| SVM RNA-class probability | 0.892246 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 754048 63 + 3288761 CCAGCAUCCGAAGUAUAGCUUCGUGUGUCGUUCGUCGU-------------UCCUGAUGUUACUUGUUAACUUAGA ...(((..(((((.....)))))..)))..........-------------..((((.((((.....)))))))). ( -12.50, z-score = -1.19, R) >droSim1.chr3h_random 193058 74 - 1452968 CCAGCAUCCGAAUUAUAGCUUCGUGUGUCGUUCGUCGUCACACGCAGCUUUUCCUGAUGUUACUUGUUAACUUA-- ..((((((.(((....((((.((((((.((.....)).)))))).)))).)))..)))))).............-- ( -23.50, z-score = -4.74, R) >droSec1.super_90 110454 72 + 127117 CCAGCAUCCGUAGUAUAGCUUCGUUUGUCGUUCGUCGUCACACGCAGUUUUUCCUGAUGUUACUUGUUAACU---- ..((((((.(.((...((((.(((.((.((.....)).)).))).)))).)).).))))))...........---- ( -13.70, z-score = -1.51, R) >droEre2.scaffold_4784 25245694 76 + 25762168 CCAGCAUCCGAAGUAAACCUUCGUGUGUCGUUCCUCGGUACGCACAGCUCUCAUUGCUGUUACUUGUUAACUUAUA ..((((...((((.....))))((((..((.....))..))))(((((.......)))))....))))........ ( -18.20, z-score = -2.39, R) >consensus CCAGCAUCCGAAGUAUAGCUUCGUGUGUCGUUCGUCGUCACACGCAGCUUUUCCUGAUGUUACUUGUUAACUUA__ ..((((((.((((.....))))(((((.((.....)).)))))............))))))............... ( -8.80 = -10.80 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:21 2011