| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 622,238 – 622,322 |
| Length | 84 |
| Max. P | 0.718249 |
| Location | 622,238 – 622,322 |
|---|---|
| Length | 84 |
| Sequences | 4 |
| Columns | 88 |
| Reading direction | reverse |
| Mean pairwise identity | 47.14 |
| Shannon entropy | 0.91937 |
| G+C content | 0.43691 |
| Mean single sequence MFE | -16.43 |
| Consensus MFE | -4.57 |
| Energy contribution | -6.20 |
| Covariance contribution | 1.63 |
| Combinations/Pair | 1.38 |
| Mean z-score | -1.23 |
| Structure conservation index | 0.28 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.718249 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 622238 84 - 3288761 UAUGCUUCAUCAAUAAAACAUAGCUUCGGCAUU-GCCGUAGAAUCUUGUCUUAUUAUUGA---CAUAAUUGCCGAUCCACAAGGCCGG ((((..(((..(((((.(((...((.((((...-)))).)).....))).)))))..)))---))))...(((.........)))... ( -16.60, z-score = -0.89, R) >droSim1.chrU 3776843 73 - 15797150 UAAGCUUGACCAAU-AAACAUUGCUCCGGCUUUAGCCGGAUGUAAUUGAUAUAAUUUCCGACCCACAAGGCCGG-------------- ..............-....(((((((((((....)))))).)))))...........(((.((.....)).)))-------------- ( -18.70, z-score = -2.07, R) >droEre2.scaffold_4929 4920539 87 + 26641161 UACGCUUCGAUAAUAAAACAUUGCUCCGGCUUUAGUCGCAAUUAUUUUG-ACUAUCACUGGAGGAAAGUAUCUCCCCAACAUAACCAU .................((.((.((((((...((((((.((....))))-))))...)))))).)).))................... ( -16.10, z-score = -1.54, R) >droAna3.scaffold_13260 1489577 84 + 2125536 UCUCCUUUAGCAGGUAAGCAUAGCUUACGCCUC-GCAAAAGCCACCUGACGUCUUGUUUA---CACAUUUCGCGUACACCACGACCAG ....((((.((((((((((...))))..)))).-)).))))....(((..(((..((.((---(.(.....).))).))...)))))) ( -14.30, z-score = -0.41, R) >consensus UAUGCUUCAACAAUAAAACAUAGCUCCGGCUUU_GCCGAAGAUACUUGACAUAAUAUCUA___CACAAUUCCCG__CAACA_GACCAG ......................((((((((....)))))))).............................................. ( -4.57 = -6.20 + 1.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:16 2011