| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 565,819 – 565,904 |
| Length | 85 |
| Max. P | 0.920314 |
| Location | 565,819 – 565,904 |
|---|---|
| Length | 85 |
| Sequences | 3 |
| Columns | 86 |
| Reading direction | reverse |
| Mean pairwise identity | 65.37 |
| Shannon entropy | 0.50171 |
| G+C content | 0.35382 |
| Mean single sequence MFE | -13.07 |
| Consensus MFE | -6.95 |
| Energy contribution | -8.07 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.53 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.28 |
| SVM RNA-class probability | 0.920314 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 565819 85 - 3288761 UCGACGUUCAUACUCUACGAGUAACGGCUAUAAAAACUAUGUUAUGCCCAAAAAGCGGAAUAGCGAUUCCAUUGUAA-AUAUUUUC (((..((((.(((((...)))))..(((.((((........))))))).........))))..)))...........-........ ( -13.00, z-score = -0.16, R) >droSec1.super_65 130340 69 - 171001 ----------------ACGAGUAACGGGUAUAAAAAUUAUAUUAUGCCCACAAAUUAGAAGCGAGAUUCCAUUGUAA-AUAAUUUC ----------------.........((((((((........))))))))..((((((...((((.......))))..-.)))))). ( -13.20, z-score = -2.51, R) >droYak2.chr2L_random 980751 79 - 4064425 UUAUCCCUACUACUCAACGAGUAACGGGUAUAAAAACUA-------CCCAAAAUGCAGAAACGCAACUCCAUUGUAACAUACAUCC ..........(((.....((((...(((((.......))-------)))....(((......)))))))....))).......... ( -13.00, z-score = -2.60, R) >consensus U___C__U__UACUC_ACGAGUAACGGGUAUAAAAACUAU_UUAUGCCCAAAAAGCAGAAACGCGAUUCCAUUGUAA_AUAAUUUC ..................((((...((((((((........)))))))).....((......)).))))................. ( -6.95 = -8.07 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:14 2011