| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 558,571 – 558,684 |
| Length | 113 |
| Max. P | 0.805920 |
| Location | 558,571 – 558,684 |
|---|---|
| Length | 113 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 71.05 |
| Shannon entropy | 0.48426 |
| G+C content | 0.53848 |
| Mean single sequence MFE | -43.40 |
| Consensus MFE | -19.14 |
| Energy contribution | -20.20 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.98 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.805920 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 558571 113 + 3288761 CAGAAGCUAAUCCUGCUUGGAUGCCUUUCGGUAUGCCGAACAGUGUCCACAGUGGCACUGCAGGUAUUGGU-GGAGCUCCCCCGCUUGACUUGGCGGCUAAGUUAUAAGCGGUC .....((((((((((((((((((((....))))).))))..((((((......))))))))))).))))))-((....)).(((((((((((((...))))))))..))))).. ( -43.00, z-score = -1.71, R) >droAna3.scaffold_13770 838716 114 - 865660 CAAAGGUUGAUUUUGUUGGGGUGUAUGCCUGUGUGUCGCACUGUCUCUACGGAGGCAUUGCAAGUUUUGUUUGGAGCAGUUCCCCUUGACUUGGAGAUACGGCGUAGAGCCGUA (((((.....)))))...((.(.((((((.((((.(((((.((((((....)))))).)))(((((..(...((((...)))).)..))))).)).)))))))))).).))... ( -39.90, z-score = -2.02, R) >droVir3.scaffold_12737 45097 114 + 48473 CAGAAAGUGCUUCUGUUAGGUUGUUUGCCUGUGUGCCGCACUGUCUCUACGGAGGCAAUGCAGGUACUGUUAGGAGUAGCCCCUCUUGACUUGGAGAUCAGGCGUCGAGCCUUG (((((.....)))))..(((((...((((((.((((((((.((((((....)))))).))).))))).((((((((......))))))))........))))))...))))).. ( -47.40, z-score = -3.08, R) >droGri2.scaffold_15040 44838 114 - 162499 CAGCGUGUGAUGUUGUUAGGGUGUCUGCCUGUAUGCCGCACUGUCUCCACGGAGGCAAUGCAGGUGUUGUUAGGAGUAGCCCCUCUGGACUUGGAGAUCAGGCGUCGUAGCCUG ((((((...))))))...((((..((.((((.((((((((.((((((....)))))).))).)))))...))))))..))))((((......))))..(((((......))))) ( -43.30, z-score = -1.12, R) >consensus CAGAAGGUGAUUCUGUUAGGGUGUCUGCCUGUAUGCCGCACUGUCUCCACGGAGGCAAUGCAGGUAUUGUUAGGAGCAGCCCCUCUUGACUUGGAGAUCAGGCGUCGAGCCGUG (((((.....)))))...((.(((...((((.((((((((.((((((....)))))).))).)))))...)))).))).)).((((......)))).................. (-19.14 = -20.20 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:13 2011