| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,064,918 – 2,064,981 |
| Length | 63 |
| Max. P | 0.626229 |
| Location | 2,064,918 – 2,064,981 |
|---|---|
| Length | 63 |
| Sequences | 4 |
| Columns | 63 |
| Reading direction | forward |
| Mean pairwise identity | 93.33 |
| Shannon entropy | 0.10602 |
| G+C content | 0.33888 |
| Mean single sequence MFE | -15.28 |
| Consensus MFE | -10.66 |
| Energy contribution | -11.47 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.70 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.626229 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2064918 63 + 23011544 AAAUUGGAUUUUCAGGUGAUACGACAAAGUGUGGCAUAUAAAUCAUGUGAUUAAGAAAAUCCA ....(((((((((..((.((((......)))).)).....((((....))))..))))))))) ( -18.10, z-score = -3.81, R) >droYak2.chr2L 2051557 61 + 22324452 AAAUGGAAUUUCCAGGUGACACGACAAAGUGUGGCAUAUAAAUCAAGUGAUUAAGAA--UCCA ...((((........((.((((......)))).)).....((((....)))).....--)))) ( -12.60, z-score = -1.47, R) >droSec1.super_14 2011396 62 + 2068291 AAAUUGGAUUUUCGGGUGAUACGACAAAGUGUGGCAUAUAAAUCAUGUGAUUAAGAAA-UCCA ....((((((((...((.((((......)))).)).....((((....))))..))))-)))) ( -14.10, z-score = -1.91, R) >droSim1.chr2L 2035399 62 + 22036055 AAAUUGGAUUUCCAGGUGAUACGACAAAGUGUGGCAUAUAAAUCAUGUGAUUAAGAAA-UCCA ....((((((((...((.((((......)))).)).....((((....))))..))))-)))) ( -16.30, z-score = -2.75, R) >consensus AAAUUGGAUUUCCAGGUGAUACGACAAAGUGUGGCAUAUAAAUCAUGUGAUUAAGAAA_UCCA .....(((.((((..((.((((......)))).)).....((((....))))..)))).))). (-10.66 = -11.47 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:06 2011