| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 558,213 – 558,314 |
| Length | 101 |
| Max. P | 0.940543 |
| Location | 558,213 – 558,314 |
|---|---|
| Length | 101 |
| Sequences | 4 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 61.56 |
| Shannon entropy | 0.64368 |
| G+C content | 0.55307 |
| Mean single sequence MFE | -38.75 |
| Consensus MFE | -17.70 |
| Energy contribution | -17.08 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.65 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.46 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.46 |
| SVM RNA-class probability | 0.940543 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 558213 101 + 3288761 GUACAUCGUAGAAACGUGGGGAGCGGAACUUGGAGUUGCCGUUUCGACCAGCAAGACGGUAAUAAUGCUACUGAAAGGUGCCUUGAGA------CGUGCGCCUACGG- ..............(((((((.(((...((..(.((((((((((.(.....).))))))))))...((.(((....))))).)..)).------))).).)))))).- ( -30.00, z-score = -0.38, R) >droAna3.scaffold_13770 838331 101 - 865660 GCGCAUUGUUGGCCAGUGGGGCGACAGUGUGGGUGUCAGCUUGGCAAGGGAUAAGACUGUGGCAAUGUUGCUGAAAGGCAGCUUGUC------CAGGUCCCCCGUUG- .((((((((((.((....)).))))))))))((((((.....)))).(((((....(((.(((((.((((((....)))))))))))------))))))))))....- ( -46.00, z-score = -2.85, R) >droVir3.scaffold_12737 44706 107 + 48473 GCGCACUGUGUAUGAGUGGGGUGAAAGUGUUGGGGUCAGUCUUGCAAUGGACAAGACAGUGUCAAUGCUGCUCAAGGGCAGAUUGGCAGCUAGUCGGCCACCCAUUG- .(.((((.......)))).).....((((..((((((.((((......))))..((((((((((((.(((((....)))))))))))).)).))))))).)))))).- ( -37.60, z-score = -0.68, R) >droGri2.scaffold_15040 44447 107 - 162499 GCGAGUUGUGUAUGAGUGGGGUCUCAGUGUUGGCGUCAGUCUGGCAAUGGACAAGACCGUGACAAUGCUGCUUAAGGGCAGAUUGUCGCGUAGUCGACC-CCCAUUGG ...............(.(((((((((.(((..((....).)..))).)))....((((((((((((.(((((....))))))))))))))..)))))))-)))..... ( -41.40, z-score = -2.06, R) >consensus GCGCAUUGUGGAUGAGUGGGGUGACAGUGUUGGAGUCAGCCUGGCAAUGGACAAGACAGUGACAAUGCUGCUGAAAGGCAGAUUGUCA_____UCGGCC_CCCAUUG_ ..............((((((..............(((............)))........((((((.(((((....))))))))))).............)))))).. (-17.70 = -17.08 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:12 2011