| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 522,819 – 522,901 |
| Length | 82 |
| Max. P | 0.827327 |
| Location | 522,819 – 522,901 |
|---|---|
| Length | 82 |
| Sequences | 3 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 69.50 |
| Shannon entropy | 0.42002 |
| G+C content | 0.52890 |
| Mean single sequence MFE | -29.70 |
| Consensus MFE | -16.86 |
| Energy contribution | -15.77 |
| Covariance contribution | -1.10 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.57 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.827327 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 522819 82 - 3288761 CGAAUGUCUUCUGCGUCUCCACACGCUGGGAAUGUCAUCCUCCUG--AGUCCUCGGUGUGUCCGGCUGCUAAGCCGUGACUUAA----------- ..............(((...(((((((((((...(((......))--).))).)))))))).(((((....))))).)))....----------- ( -26.00, z-score = -2.07, R) >droSec1.super_71 117020 91 - 157554 CAGAUGUCCUCUGCGUCUUCAGACGUUUGGAAUACUUUCCACCUG--AGUCCAAGG--UGUUUAGCUGCUUAGCUGGGGAGUGAUGACUUCUUAA .(((.(((((..(((((....)))))..))..((((..(((.(((--(((....((--(.....))))))))).)))..))))..))).)))... ( -29.50, z-score = -1.75, R) >droSim1.chrU 12051445 94 + 15797150 CAAGUGUCCUUUGCGUCUCCAGACGUUGGGAAUGUCUUCCUCCUGAGAGUCCACGGUGUGUCCGGCUGCUAAGCUGGAGAGUGACGAC-UCUUAC .(((..((((..(((((....))))).))))....))).....(((((((((((....(.(((((((....))))))).))))..)))-))))). ( -33.60, z-score = -1.55, R) >consensus CAAAUGUCCUCUGCGUCUCCAGACGUUGGGAAUGUCUUCCUCCUG__AGUCCACGGUGUGUCCGGCUGCUAAGCUGGGGAGUGA_GAC_UCUUA_ .((...(((...(((((....)))))..)))...))........................(((((((....)))))))................. (-16.86 = -15.77 + -1.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:10 2011