Locus 2846

Sequence ID dm3.chr2RHet
Location 513,516 – 513,632
Length 116
Max. P 0.788206
window3926

overview

Window 6

Location 513,516 – 513,632
Length 116
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 56.41
Shannon entropy 0.61468
G+C content 0.46839
Mean single sequence MFE -27.90
Consensus MFE -12.51
Energy contribution -11.54
Covariance contribution -0.98
Combinations/Pair 1.52
Mean z-score -1.28
Structure conservation index 0.45
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.69
SVM RNA-class probability 0.788206
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 513516 116 + 3288761
-GCCCAACUCAAAUGGGGUCAGGAAGUUGAGAAGAUUUCA-UUCCAUAAAUGCACUGACGUCAACUUCACUAACGUGGAGUGCGCAGAUGCACCACCUUUGGUGAAGAAGGCAUUUCU
-(((....(((...(((((..((((..(((((...)))))-)))).....(((((((.(((..(((((((....))))))))))))).))))..)))))...)))....)))...... ( -37.00, z-score =  -2.25, R)
>droPer1.super_109 49021 116 - 183219
GACACAAUAAAAAUAGGUGC--AACUUCGGAGGCGCUGCAGUACCUCAAAUGUACUAACGUCAACCACACUAAAAACGAAGAUAUACAAGCACCACCUGCGGUAAAAGCGGAUUUCCU
...............(((((--..(((((((((..(....)..))))...((.((....)))).............)))))........)))))..((((.......))))....... ( -25.80, z-score =  -1.71, R)
>droVir3.scaffold_12723 5367498 100 - 5802038
----------------GAGC--GACUUAGGAAGCGUUGCAGUACCACAAAUGUGCGAACGUCAAUUACAAGAAGAACACAGAAGUCGACGCACCCCCUGCGGUGAAAGCAGAUUUCCU
----------------....--.....((((((((((((.((.((((....))).).)).((........))...........).)))))).....((((.......))))..))))) ( -20.90, z-score =   0.11, R)
>consensus
__C_CAA___AAAU_GGAGC__GACUUAGGAAGCGUUGCAGUACCACAAAUGUACUAACGUCAACUACACUAAAAACGAAGAAGUAGAAGCACCACCUGCGGUGAAAGCGGAUUUCCU
............................((((...((((..((((.((..(((((((.((((..................))))))).)))).....)).))))...))))..)))). (-12.51 = -11.54 +  -0.98)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:09 2011