| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 506,079 – 506,186 |
| Length | 107 |
| Max. P | 0.730436 |
| Location | 506,079 – 506,186 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 65.89 |
| Shannon entropy | 0.54552 |
| G+C content | 0.45630 |
| Mean single sequence MFE | -31.03 |
| Consensus MFE | -12.19 |
| Energy contribution | -12.12 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.730436 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 506079 107 - 3288761 GAUUUUCACAAUCGGACUCUGAGUCC--GUGGAGUAUGGUGUACUAUUCCUAUACUGUGAGGAACUGGGCUG-CAUGAGCAGUCCAAUUCGCUUAGGUAUGCAAAAGCUG ....((((((..(((((.....))))--).((((((.(.....))))))).....))))))(((.(((((((-(....)))))))).)))((((..(....)..)))).. ( -37.80, z-score = -2.94, R) >droSim1.chr2h_random 1063892 101 - 3178526 GAUGUUCGCUAUCG------GAGUAU--GUGGAGUGUGGUUUAUUAUUCCUACACUCUGAGAAUCCGGGCUG-CAUGAGCAGUCCAACUCGCUUAGGUAUGCAAAACCUG .......(((((((------((....--.((((((((((..........))))))))))....)))((((((-(....)))))))..........)))).))........ ( -34.00, z-score = -2.47, R) >droSec1.super_94 29331 101 - 93855 GAUGUUCGCUAUCG------GAGUAU--GUGGAGUGUGGUUUAUUAUUCCUACACUCUGAGAAUCCGGGCUG-CAUGAGCAGUCCAACUCGCUUAGGUAUGCAAAAGCUG .......(((((((------((....--.((((((((((..........))))))))))....)))((((((-(....)))))))..........)))).))........ ( -34.00, z-score = -2.23, R) >droAna3.scaffold_13099 3001512 108 - 3324263 GAACGCCCCCUUCGCCCUCAGAUUCCAAACCUAGAAUAACUUUUUCUGCUUCUAUGGUAAAUAAUGAAUCGGUCAUGAGUAGCUAGAUUAAUGUUGG-GUG-AAAAUCUG ..........(((((((.(((((((...((((((((.............))))).))).......)))))(((........))).......))..))-)))-))...... ( -18.32, z-score = 0.31, R) >consensus GAUGUUCGCUAUCG______GAGUAC__GUGGAGUAUGGUUUAUUAUUCCUACACUCUGAGAAACCGGGCUG_CAUGAGCAGUCCAACUCGCUUAGGUAUGCAAAAGCUG ((((.....)))).......((((......(((((((((..........)))))))))........((((((.(....))))))).)))).................... (-12.19 = -12.12 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:08 2011