| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 449,756 – 449,860 |
| Length | 104 |
| Max. P | 0.678027 |
| Location | 449,756 – 449,860 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 71.26 |
| Shannon entropy | 0.48071 |
| G+C content | 0.54972 |
| Mean single sequence MFE | -37.83 |
| Consensus MFE | -22.14 |
| Energy contribution | -22.45 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.19 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.678027 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 449756 104 + 3288761 ACUCAGAAACAGGAGCAUGAGAAGGAGGAGCCCCAGGUGUUGGAGAC-----GGGAA-------UUUGGUCGCAGUACCAGUGGGGAGGAAAUAAUCCUCCUCCGUUUCCGAUGCC .((((............))))..((.(....))).((((((((((((-----((...-------.(((((......)))))..(((((((.....))))))))))))))))))))) ( -40.10, z-score = -2.38, R) >droSim1.chr2h_random 633913 107 - 3178526 ------ACUCAGAAGCAGGAGCAGGAGGAGCCCCAAGGAUUGG---CUUAAAGGGAGACGGGCAUUUGGUCGCAGUACCAGUGGGGAGGAAACAAUUCUUCUCUGUUUCCAAUGCC ------........(((((((((((((((((((((.((((((.---.......(....).(((.....))).)))).))..))))).(....)..)))))).)))))))...))). ( -34.70, z-score = -0.54, R) >droEre2.scaffold_4784 25136036 116 + 25762168 GCUCAGAAAAAGGAUCAGGAGAAGGAAGAGUCUCAGGUGUUGGAAACCCCCAGGGAAACAGGCGUCUGGUCGCAGUACCAGUGGGGAGGAAGCAAUCCUCCUCCGUUUCCAAUGCC ..................((((........)))).((((((((((((..((..(....).))...(((((......))))).((((((((.....)))))).)))))))))))))) ( -39.10, z-score = -0.73, R) >droSec1.super_165 8177 113 - 68140 GUUCAGAAACAAGA---GGAGAAAGAGGAGUCCCAACCAAGUGGAACCCAUAGGGAAACAGGCGGUUGGCCGCAGUACCGGUGGGGAGGAAACGACCAACCUCCGUUUCCGAUGCC ..............---(((((..((((..((((.(((..((((...)))).((...((..((((....)))).)).))))).))))(....)......))))..)))))...... ( -37.40, z-score = -1.12, R) >consensus GCUCAGAAACAGGAGCAGGAGAAGGAGGAGCCCCAAGUAUUGGAAACCCA_AGGGAAACAGGCGUUUGGUCGCAGUACCAGUGGGGAGGAAACAAUCCUCCUCCGUUUCCAAUGCC .................(((((.((((((((((((...........((.....))..........((((........))))))))).(....)....))))))).)))))...... (-22.14 = -22.45 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:07 2011