| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 435,282 – 435,367 |
| Length | 85 |
| Max. P | 0.749769 |
| Location | 435,282 – 435,367 |
|---|---|
| Length | 85 |
| Sequences | 3 |
| Columns | 85 |
| Reading direction | reverse |
| Mean pairwise identity | 84.46 |
| Shannon entropy | 0.21311 |
| G+C content | 0.49395 |
| Mean single sequence MFE | -25.73 |
| Consensus MFE | -21.14 |
| Energy contribution | -21.37 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.749769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 435282 85 - 3288761 GAUAGCGAGCAUUGUGAAAAUGGUGCGAGCGUGGCGGAAUCCAAACAGACGCUCGAUCAGCAGGUUUGUCUUGUUUCCAAAAUGU ....((..((((..(....)..))))..)).....((((..((((((((((((.....)))..)))))).))).))))....... ( -24.50, z-score = -0.75, R) >droSim1.chrU 3352718 81 - 15797150 ----GAGAGCGUUGCUAAAAUGGGGUGAGCGUGGCGGAAGCCAAACAGACGCUCGAUCAGCAGGUUUGUCUUGUUACCAUAAUGU ----..((((((((((...........))).((((....))))....)))))))....((((((.....)))))).......... ( -26.00, z-score = -1.54, R) >droSec1.super_281 10064 75 - 16570 ----------GUUGCUAAAAUGGGGCGAGCGUGGCGGAAGCCAAACAGACGCUCGAUCAACAGGUUUGUCUUGUUACCAUAAUGU ----------.........((((((((((((((((....)))......))))))).))((((((.....)))))).))))..... ( -26.70, z-score = -2.72, R) >consensus ____G_GAGCGUUGCUAAAAUGGGGCGAGCGUGGCGGAAGCCAAACAGACGCUCGAUCAGCAGGUUUGUCUUGUUACCAUAAUGU ...................((((..((((((((((....)))......)))))))...((((((.....)))))).))))..... (-21.14 = -21.37 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:06 2011