| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 412,114 – 412,165 |
| Length | 51 |
| Max. P | 0.909155 |
| Location | 412,114 – 412,165 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | forward |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.05402 |
| G+C content | 0.52288 |
| Mean single sequence MFE | -10.69 |
| Consensus MFE | -10.12 |
| Energy contribution | -10.46 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.909155 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 412114 51 + 3288761 ACAAAUCUGCCGAGCGAGCGUCUCUUUGAUUUCCGCCACUCUCGCCCAAAA ...........(.(((((.((................)).))))).).... ( -7.29, z-score = -0.06, R) >droSim1.chr2h_random 1140022 51 - 3178526 ACAAAUCUGCCAAGCGAGCGUCUCUUUGAUUUCCGCCACGCUCGCCCAAAA .............((((((((................))))))))...... ( -12.39, z-score = -2.27, R) >droSec1.super_70 41347 51 + 171677 ACAAAUCUGCCAAGCGAGCGUCUCUUUGAUUUCCUCCACGCUCGCCCAAAA .............((((((((................))))))))...... ( -12.39, z-score = -3.12, R) >consensus ACAAAUCUGCCAAGCGAGCGUCUCUUUGAUUUCCGCCACGCUCGCCCAAAA .............((((((((................))))))))...... (-10.12 = -10.46 + 0.33)
| Location | 412,114 – 412,165 |
|---|---|
| Length | 51 |
| Sequences | 3 |
| Columns | 51 |
| Reading direction | reverse |
| Mean pairwise identity | 96.08 |
| Shannon entropy | 0.05402 |
| G+C content | 0.52288 |
| Mean single sequence MFE | -16.93 |
| Consensus MFE | -14.32 |
| Energy contribution | -14.77 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.88 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602515 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 412114 51 - 3288761 UUUUGGGCGAGAGUGGCGGAAAUCAAAGAGACGCUCGCUCGGCAGAUUUGU ..(((((((((.((..(.(....)...)..)).)))))))))......... ( -14.20, z-score = -0.68, R) >droSim1.chr2h_random 1140022 51 + 3178526 UUUUGGGCGAGCGUGGCGGAAAUCAAAGAGACGCUCGCUUGGCAGAUUUGU ..(..(((((((((..(.(....)...)..)))))))))..)......... ( -19.40, z-score = -2.64, R) >droSec1.super_70 41347 51 - 171677 UUUUGGGCGAGCGUGGAGGAAAUCAAAGAGACGCUCGCUUGGCAGAUUUGU ..(..(((((((((................)))))))))..)......... ( -17.19, z-score = -2.34, R) >consensus UUUUGGGCGAGCGUGGCGGAAAUCAAAGAGACGCUCGCUUGGCAGAUUUGU ..((((((((((((..(.(....)...)..))))))))))))......... (-14.32 = -14.77 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:06 2011