| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 386,069 – 386,123 |
| Length | 54 |
| Max. P | 0.787164 |
| Location | 386,069 – 386,123 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 54.32 |
| Shannon entropy | 0.65995 |
| G+C content | 0.37654 |
| Mean single sequence MFE | -8.23 |
| Consensus MFE | -4.45 |
| Energy contribution | -4.23 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.57 |
| Mean z-score | -0.67 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.69 |
| SVM RNA-class probability | 0.787164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 386069 54 - 3288761 UCCUACAGCAUUCCGCUGGAUUGGAAUGCCAUGUCAAGAUGUCUCACUCUGCAU .......((((((((......)))))))).((((..((........))..)))) ( -11.50, z-score = -0.15, R) >dp4.chrXL_group3b 383091 54 - 386183 UCCUAAAAUGUUCCUCUCAAUGGGAACGCCAUGUCGAAAUACUUAACUAUACAU .........((((((......))))))........................... ( -7.20, z-score = -1.26, R) >anoGam1.chrU 19335668 54 + 59568033 ACGAAUAAUAUUUCCACAGAUUGGAAAGAAAUUAAAGAAGUACUUCUCUUACAU .....((((.((((((.....))))))...)))).((((....))))....... ( -6.00, z-score = -0.60, R) >consensus UCCUAAAAUAUUCCCCUAGAUUGGAAAGCCAUGUCAAAAUAACUAACUAUACAU ........(((((((......))))))).......................... ( -4.45 = -4.23 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:01 2011