| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 353,810 – 353,925 |
| Length | 115 |
| Max. P | 0.998381 |
| Location | 353,810 – 353,925 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.83 |
| Shannon entropy | 0.35732 |
| G+C content | 0.58227 |
| Mean single sequence MFE | -47.88 |
| Consensus MFE | -30.06 |
| Energy contribution | -30.86 |
| Covariance contribution | 0.80 |
| Combinations/Pair | 1.22 |
| Mean z-score | -3.49 |
| Structure conservation index | 0.63 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.34 |
| SVM RNA-class probability | 0.998381 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 353810 115 - 3288761 UAUAGUCACCGAUCGUGGACACCACCUGAUCCCGAUCCGCACUCUGCACCACACCACAGCUACAGAGGCGACAACGAGGUGACU--GUGUUGUGGGCAGCAACGUGUCGCAAC-ACAC-- ...((((((((((((.(((((.....)).))))))))(((.(((((................)))))))).......)))))))--(((((((((.((......)))))))))-))..-- ( -43.39, z-score = -2.55, R) >droSim1.chr2h_random 1700943 115 + 3178526 UAUAGUCACCGAUCGUGGCCACCACCUGGUCCCGAUCCGCACUCUGUACCACACCGCAGCUACAGAGGCGACAACGAGGUGACU--GUGUUGUGGGCAGCAACGUGCCGCAAC-ACAC-- ...((((((((((((.(((((.....))))).)))))(((.(((((((.(........).)))))))))).......)))))))--(((((((((.((......)))))))))-))..-- ( -53.50, z-score = -4.46, R) >droSec1.super_6 4341880 115 + 4358794 UAUAGUCACCGAUCGUGGACACCACCUGAUCACGAUCCGCACUCUGCACCACACCACAGCUAAAUAGGCGACAACGAGGUGACU--GUGUUGUGAGCAGCAACGUGCCGCAAC-ACAC-- ...(((((((((((((((.((.....)).))))))))(((.....((...........)).......))).......)))))))--((((((((.(((......)))))))))-))..-- ( -41.30, z-score = -3.39, R) >droEre2.scaffold_4845 1960405 115 - 22589142 UAUAGUCACCUAUCCUGGUCACCACCAGGUCCCGAUCCGCGAUCUGUACCACACCACAGCUACAGAGGCGACAUCGAGGUGACU--GUGCUGUGGGCAGCAACGUGCCGCAAC-ACCC-- ...((((((((..((((((....))))))...((((.(((..((((((.(........).)))))).)))..))))))))))))--(((.(((((.((......))))))).)-))..-- ( -44.20, z-score = -2.65, R) >droAna3.scaffold_13339 643545 117 - 4599533 CAUCAUCACUGAUCGUGG---CCACCUGGUCGUGAUCGGUGCUCUGCAGUGCUACACGACUGUAGAGUCACCUGCCGAGUGACCUGCCGUUGUGGGCAGCCACUUGCCACAACGGUACCC .....(((((((((((((---((....))))))))))(((((((((((((........))))))))).)))).....)))))..(((((((((((.(((....))))))))))))))... ( -57.00, z-score = -4.43, R) >consensus UAUAGUCACCGAUCGUGGACACCACCUGGUCCCGAUCCGCACUCUGCACCACACCACAGCUACAGAGGCGACAACGAGGUGACU__GUGUUGUGGGCAGCAACGUGCCGCAAC_ACAC__ ...(((((((((((((((...))))..))))......(((.(((((((.(........).)))))))))).......)))))))..((((((((.(((......))))))))).)).... (-30.06 = -30.86 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:59:01 2011