| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 250,379 – 250,474 |
| Length | 95 |
| Max. P | 0.990134 |
| Location | 250,379 – 250,474 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 52.90 |
| Shannon entropy | 0.83656 |
| G+C content | 0.59352 |
| Mean single sequence MFE | -36.07 |
| Consensus MFE | -14.86 |
| Energy contribution | -16.52 |
| Covariance contribution | 1.66 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.40 |
| SVM RNA-class probability | 0.990134 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 250379 95 - 3288761 -------GGAUGUUAUGGUGCA-GGGUGUAUCGUCCACGGGCGAGGC--AACGCUCGGCCUGGGACCACCUUUGCCGACCACUGACUCCACUGUCCCUCUCGAGC------------ -------(((.(((((((((((-(((((....((((.((((((((..--....))).))))))))))))).))))..)))).)))))))................------------ ( -36.90, z-score = -0.75, R) >droEre2.scaffold_4929 21633386 80 - 26641161 -------GGAUGUUAUUGUGGGGAGGUGUAUCGUCCGUGAGU------------------CCGGACCACCUUGACCAACCAAUGACUCCACAGACCCUCCUGAUC------------ -------(((.((((((((((.((((((..(((..(....).------------------.)))..))))))..)))..)))))))))).(((......)))...------------ ( -30.70, z-score = -2.05, R) >droYak2.chr2L_random 977444 97 + 4064425 -------GGAUGUUAUGGGGGCUGGGUGUAUCGUCCGUGAGUUAAGC-UAGCGCUCCUCUCCGAACCACCGCAGC-GACCACUGACUCCACCGUCCCUUUUCUGAC----------- -------(((.(((((((..((((((((....((.((.(((...(((-....)))...))))).)))))).))))-..))).)))))))...(((........)))----------- ( -31.80, z-score = -0.73, R) >droSim1.chrU 2372944 79 + 15797150 -------GGAUGUUAUGGUGCGCAGGUGUAUCGUCC-CGGGUGAGGC--AACGCUCGUCCUGGAACCACCUGUGCUAUCCACUGACUCC---------------------------- -------(((.(((((((.(((((((((....((.(-((((((((..--....)))).))))).)))))))))))...))).)))))))---------------------------- ( -37.20, z-score = -3.71, R) >droSec1.super_117 11632 93 + 73569 -------GGAUGUUAUGGUGCA-GGGUGUAUCGUCCACGGGCGAGGC--AACGCUCGGCCUGGGACCACCUUUGCUGGCCACUGACUCCACUGAUCCUUACGA-------------- -------(((.(((((((((((-(((((....((((.((((((((..--....))).))))))))))))).))))..)))).)))))))..............-------------- ( -37.20, z-score = -1.54, R) >droAna3.scaffold_13082 3221552 116 - 3919855 GGCGUCGCGUCUCCUUUGACUCCAGGUGGACCG-CUGUGCAUACGCUCCAGCGCCUGGAUCAGGAUUCUCUUGACUUCCCGGGGUGUCCCUGCCUGGUUUCACUAUUGGGCUUGAGU .((.(((.((((....(((..((((((((((((-(((.((....))..)))))(((((.(((((.....)))))....)))))..))))..))))))..))).....)))).))))) ( -42.60, z-score = -0.63, R) >consensus _______GGAUGUUAUGGUGCA_AGGUGUAUCGUCCGCGGGUGAGGC__AACGCUCGGCCCGGGACCACCUUUGCUGACCACUGACUCCACUGACCCUUUCGA______________ .......(((.(((((((.(((.(((((....((((.((((((((........)))).))))))))))))).)))...))).)))))))............................ (-14.86 = -16.52 + 1.66)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:59 2011