| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 246,627 – 246,712 |
| Length | 85 |
| Max. P | 0.500000 |
| Location | 246,627 – 246,712 |
|---|---|
| Length | 85 |
| Sequences | 5 |
| Columns | 88 |
| Reading direction | forward |
| Mean pairwise identity | 64.77 |
| Shannon entropy | 0.63390 |
| G+C content | 0.47316 |
| Mean single sequence MFE | -19.06 |
| Consensus MFE | -10.22 |
| Energy contribution | -11.34 |
| Covariance contribution | 1.12 |
| Combinations/Pair | 1.26 |
| Mean z-score | -0.45 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 246627 85 + 3288761 UGGGAUGAACGCACAAACUCUCUGAGCUAGCCGCUGCAAUCCGUAGCGAGCGAAA-UAAGAAAAUCAGUUCGUUACAAGAUGGCCA-- ((..((((((((.((.......)).))..((((((((.....)))))).))....-...........))))))..)).........-- ( -22.20, z-score = -0.82, R) >droSim1.chrU 2295544 81 - 15797150 UGAGACGAACGCACAAACUCUCUGAGCUAACCGCUGCAAUCCGUAGCGAGCGAAAAUAUGAAAAGCAGUUCGUUACACAAU------- ((.(((((((((.............(((...((((((.....))))))))).............)).))))))).))....------- ( -21.07, z-score = -2.17, R) >droYak2.chrU 6258673 78 - 28119190 UGGCACGAACAAAUAAACUCUCUGAGCUAGCCGUUGCAAUCCGUAGCGGGCAGAAACCAAGAAAUCCAUUCGUUACAA---------- ((..(((((........(((...)))((..(((((((.....)))))))..))...............)))))..)).---------- ( -14.40, z-score = 0.05, R) >droEre2.scaffold_4929 985042 88 - 26641161 UGGGACGAACAAACAAACUCUCUGAGCUAGCCGUUGCAAUUCGUAGCGAGCAGAACCAAGGAAAACAGUUCGUUACAUCUGGCGCCCA .(((.(((((........((..((..((.((((((((.....)))))).))))...))..)).....))))((((....)))))))). ( -20.72, z-score = -0.01, R) >droAna3.scaffold_13045 373140 86 - 1551108 UGGAACGUUCCCCCAAACUCUGUGAGCUAGACGCGGCAUUUGUUGAAAAUCGCUAGAUUCAAUUUGUAGCCUUCGUUAGAUGGCCA-- .(((....)))...........((.((((((((.(((((..(((((..(((....))))))))..)).)))..))))...))))))-- ( -16.90, z-score = 0.69, R) >consensus UGGGACGAACACACAAACUCUCUGAGCUAGCCGCUGCAAUCCGUAGCGAGCGAAAACAAGAAAAUCAGUUCGUUACAAGAUG__C___ ((..((((((.......(((...)))...((((((((.....)))))).))................))))))..))........... (-10.22 = -11.34 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:58 2011