| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 163,205 – 163,282 |
| Length | 77 |
| Max. P | 0.950006 |
| Location | 163,205 – 163,282 |
|---|---|
| Length | 77 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 54.44 |
| Shannon entropy | 0.69154 |
| G+C content | 0.51239 |
| Mean single sequence MFE | -19.82 |
| Consensus MFE | -8.94 |
| Energy contribution | -9.50 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.56 |
| SVM RNA-class probability | 0.950006 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 163205 77 + 3288761 ----------------UUCUAGU-UCGUUGGCUUAUCUUAACUACUCCCCCUUCAAGAUUACGGCCGUCCUCGACUGGUCCCAAUUCGGGGAUC- ----------------..(((((-.((.(((((.(((((...............)))))...)))))....)))))))((((......))))..- ( -18.46, z-score = -0.57, R) >droPer1.super_15 2166591 77 - 2181545 -----------------GCCAAUUUGGUUAGCAUGUGUUAACUACUCCCUCCUUCAAGACUUGGCCGUCCGCGGUCAAGCCCAAGCCCAAGUUC- -----------------...((((((((((((....)))))).................((((((((....))))))))........)))))).- ( -20.00, z-score = -2.06, R) >droWil1.scaffold_181056 2615 74 + 36443 -----------------GUUCGUUGACUUGGC---UGUUAACUAGUCCCCCCUUAAGAUUGUUGCCGUCCUCGGUGACACUUA-GUUCAUUUACC -----------------....((((((.....---.))))))..........(((((..(((..(((....)))..)))))))-).......... ( -17.30, z-score = -2.15, R) >droVir3.scaffold_12958 129705 93 - 3547706 CUAUAUCAGCAUCUGAAGCUGGUAUCGUUGGCCUCUGUUAACUGCUCCCC-UUUAAAGUUAAGGCCGCCCUCGGCCGCUCCCAUCUCGGUGAUC- ..((((((((.......)))))))).(..(((.....((((((.......-.....))))))(((((....))))))))..)............- ( -23.50, z-score = -0.77, R) >consensus _________________GCUAGUUUCGUUGGC_U_UGUUAACUACUCCCCCCUUAAAAUUAUGGCCGUCCUCGGCCACUCCCAAGUCCAUGAUC_ ..........................((((((....)))))).................((((((((....))))))))................ ( -8.94 = -9.50 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:57 2011