Locus 2832

Sequence ID dm3.chr2RHet
Location 153,513 – 153,629
Length 116
Max. P 0.872027
window3908

overview

Window 8

Location 153,513 – 153,629
Length 116
Sequences 3
Columns 116
Reading direction forward
Mean pairwise identity 52.30
Shannon entropy 0.68568
G+C content 0.45402
Mean single sequence MFE -25.75
Consensus MFE -7.07
Energy contribution -6.30
Covariance contribution -0.77
Combinations/Pair 1.69
Mean z-score -2.20
Structure conservation index 0.27
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.00
SVM RNA-class probability 0.872027
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2RHet 153513 116 + 3288761
UCCAUUCACAACCUCCAUUGCCCUGUUUUCUUUGUCACCAUCACUAUCGGUGAGCUGUACGGGCUUUUAGACAGCUCGAUACAUCCUUUUUCUAACAGCUCAUCGACGUUGGCGUU
...................(((..........((.......))...((((((((((((..(((((.......)))))((...........))..))))))))))))....)))... ( -26.50, z-score =  -1.83, R)
>anoGam1.chr2R 62375978 116 + 62725911
UCGACUGCCAUUCUAAACUGUCCAUUUUUCUUCGGCACCAAUACUAUCGGGCUGUUGUAUGGUGCUUCUGAUUCCUUUAUGAUGCCAGUAUCUAACAACUCACCCACCAACUCACU
...((((.((((.((((..(((...........(((((((.(((............))))))))))...)))...)))).)))).))))........................... ( -18.04, z-score =  -0.08, R)
>triCas2.ChLG7 11651 116 + 17478683
UCUAUACAGAACCGAUACUCGUUAUUUGGCUUCUUCACCAUCACAACUGGUGAAGACCACGCCGACCGCGACGGUUCAAUUACGCCUAGAGUAAGCAUUUUAUCCACUUCCUCAUU
........((((((....((((...(((((.(((((((((.......)))))))))....)))))..))))))))))...........(((.(((...........))).)))... ( -32.70, z-score =  -4.68, R)
>consensus
UCCAUUCACAACCUAAACUGCCCAUUUUUCUUCGUCACCAUCACUAUCGGUGAGCUGUACGGCGAUUCAGACAGCUCAAUAAAGCCUAUAUCUAACAACUCAUCCACCUACUCAUU
................................................((((((((((..(((..........................)))..))))))))))............ ( -7.07 =  -6.30 +  -0.77)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:55 2011