| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 133,719 – 133,834 |
| Length | 115 |
| Max. P | 0.588361 |
| Location | 133,719 – 133,834 |
|---|---|
| Length | 115 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 73.27 |
| Shannon entropy | 0.44693 |
| G+C content | 0.60190 |
| Mean single sequence MFE | -45.88 |
| Consensus MFE | -23.77 |
| Energy contribution | -24.29 |
| Covariance contribution | 0.52 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.52 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588361 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 133719 115 + 3288761 GUUGCUGGGCCGGCACUCUCAUGAUUGCAACACUCG----CUACAGCGAGAGUGACGUUGCGCUUGGUCAGCACUUAUGCUGGCUGGCCGAGGGCCCGAC-GCUCAUAGCUGGAGAGCCA ...(((...(((((..................((((----(....))))).((((((((((.((((((((((.(.......))))))))))).))..)))-).)))).)))))..))).. ( -47.70, z-score = -1.00, R) >droEre2.scaffold_4929 22330985 120 + 26641161 GGUACUGGGCCGGCACUUUCAGCAUUGCAACACUCGAGCGCGACAGCGAGAGUUACGUUGCGCUUGGUCAGCACUUAUGCUGGCUGGCUGAGGACUCAAAGGUUCGUGGUUGACGAGCCA (((.((.(((((((.....(((((((((...((.(((((((((((((....)))..))))))))))))..)))...))))))))))))).)).)))....(((((((.....))))))). ( -55.50, z-score = -3.66, R) >droYak2.chrU 4467827 106 - 28119190 GGUGCUGUGCCGGCAGUCUCAGCAUUGG-------------GACAGCGAGAGUCACGUUGCGCUUGGUCAGCACUUAUGCUGGCUGGUU-AGGGCUCAACAGCUCGUAGCUGACGAGCCA ((((((((.((.((.......))...))-------------.)))))....((((.(((((..(..(((((((....)))))))..)..-.(((((....))))))))))))))..))). ( -44.90, z-score = -1.02, R) >droSec1.super_423 7313 108 - 11511 GUUGCUGGGCUAGCACUCUCAUGAAUGCAACACUCGAGCGCGACAGCAACAGUCACGAUGC-----------ACUUAUGCUGGCCGACCGAGGGCUCGAC-GCUCAUAGCGCAGGGGCCG (((.(((.(((((((.((....)).))).......(((((((((((((..((((.....).-----------)))..)))))(((.......)))))).)-)))).)))).))).))).. ( -41.00, z-score = -1.33, R) >droSim1.chrX 464593 108 - 17042790 GUUGCUGGGCUAGCACUCUCAUGAAUGCAACACUCGAGCGCGACAGCAACAGUCACGUUGC-----------ACUUAUGCUGGCCGACCGAGGGCUCGAC-GCUCAUAGCGCGGGGGCCG (((.(((.(((((((.((....)).))).......(((((((((((((..((((.....).-----------)))..)))))(((.......)))))).)-)))).)))).))).))).. ( -40.30, z-score = -0.67, R) >consensus GUUGCUGGGCCGGCACUCUCAUGAUUGCAACACUCGAGCGCGACAGCGAGAGUCACGUUGCGCUUGGUCAGCACUUAUGCUGGCUGGCCGAGGGCUCGAC_GCUCAUAGCUGACGAGCCA ....((.(((((((.(......)....................(((((.((((...................)))).)))))))))))).))(((((....((.....))....))))). (-23.77 = -24.29 + 0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:54 2011