| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 87,736 – 87,789 |
| Length | 53 |
| Max. P | 0.994695 |
| Location | 87,736 – 87,789 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 66.98 |
| Shannon entropy | 0.59535 |
| G+C content | 0.42109 |
| Mean single sequence MFE | -13.71 |
| Consensus MFE | -8.22 |
| Energy contribution | -5.98 |
| Covariance contribution | -2.24 |
| Combinations/Pair | 2.00 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.72 |
| SVM RNA-class probability | 0.994695 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 87736 53 - 3288761 CUACGUGGAGAAUUGUCUCUCACGUUCGAGGGGUAUUGUCUAUAGUCCCUCUU ..(((((((((....)))).)))))..(((((((((.....))).)))))).. ( -19.10, z-score = -3.10, R) >droSim1.chrU 2115670 53 - 15797150 CUGUAUUGGAAGUUAUGUCUUACGUUCGGGGUGUAUUGUUGGUAAGUCCUCUU ...(((..(....(((..(((......)))..)))...)..)))......... ( -6.20, z-score = 0.59, R) >droYak2.chr2h_random 57875 53 - 3774259 CUACGUGGAGAAUUGUCUCUCACGUUCGAGGGGUAUUGUCUAUAGUCCCUCUU ..(((((((((....)))).)))))..(((((((((.....))).)))))).. ( -19.10, z-score = -3.10, R) >droSec1.super_174 26292 53 + 34763 CUAUGUGGAGAAUUGUCUCUCACGUUCGAGGGGUAUUGUCUAUAGUCCCUCUU ..(((((((((....)))).)))))..(((((((((.....))).)))))).. ( -17.30, z-score = -2.68, R) >apiMel3.GroupUn 33588589 51 - 399230636 --CUAUCUGCAAUACUUUCUGUCAUUUUAUAGAUUUUAUCAGUGAGUAUUCGU --......(((((((((.(((..................))).))))))).)) ( -6.87, z-score = -0.97, R) >consensus CUAUGUGGAGAAUUGUCUCUCACGUUCGAGGGGUAUUGUCUAUAGUCCCUCUU ....(((((.((.((((((((......)))))))))).))))).......... ( -8.22 = -5.98 + -2.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:53 2011