| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 62,330 – 62,481 |
| Length | 151 |
| Max. P | 0.532892 |
| Location | 62,330 – 62,481 |
|---|---|
| Length | 151 |
| Sequences | 4 |
| Columns | 158 |
| Reading direction | forward |
| Mean pairwise identity | 61.43 |
| Shannon entropy | 0.62119 |
| G+C content | 0.57905 |
| Mean single sequence MFE | -53.20 |
| Consensus MFE | -20.42 |
| Energy contribution | -22.92 |
| Covariance contribution | 2.50 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.38 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.08 |
| SVM RNA-class probability | 0.532892 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 62330 151 + 3288761 GUAACCGUGCACCUGCAGUAGCCAAUAAAUGC--AAGAUCAGCGUCUUGAG---CGCUUCCGUGGGAGCGACGAUGGCAGAGUCAGCAACGGAGU--UGGCACUGACGCUAGCAGAAGCAGCGACGGUGCUGGGGGGUAUAAAUACCACCCAAUUUUG ........(((((..((((.((((.......(--(((((....)))))).(---((((((....)))))).)..))))...((((((......))--)))))))).((((.((....))))))..)))))((((.((((....)))).))))...... ( -58.10, z-score = -2.31, R) >droSec1.super_143 5574 133 + 77943 ----CAGUGCACCUGCAGUAGC------------AAGAUCAGCGUCUGGAG---CGCUUCC----GAGCGACGAUGGCAGAGUCAGCAACGGAGU--UGGCACUGACGCCAGUAGAAGCAGCGACGGUGCUGGGGGGUAUAAAUACCACCCAAUUUUG ----.(.(((....))).)..(------------((((((((((.(((..(---(((((((----(.....)).((((((.((((((......))--)))).))...))))...))))).))..))))))))(((((((....)))).))).)))))) ( -46.90, z-score = -0.97, R) >droSim1.chrU 5328731 142 - 15797150 ----CCGUGCACCUGCAGUAGCCAAUAAAUGA--AAGAUCAGCGUCUGGAG---CGCUUCCGUGGGGGCGACGAUGGCAGAGCCAGCAACGGAGU--UGGCACUGACUCUAGCAGCGACGGCA-----GCUGGGGGGUAUAAAUACCACCCAACUUUG ----..((((.(((.((((.(((......(((--....)))((..((((((---((((((....)))))).......(((.((((((......))--)))).))).))))))..))...))).-----)))).))))))).................. ( -52.50, z-score = -1.05, R) >droVir3.scaffold_12963 4333563 136 - 20206255 GGACCCGUGCACGAGCAAUACAAAAUGAUACACGACAAUCUGGCGCUGGAGUUUCGUGAUCAUGAUGGUCACUCGGAGCGUCCCGGCGGCGCAGUGCUCUCCCUGACGCUGGGUCUGCUGGUGACCGCGGCGCUGG---------------------- ...((.((((.((((.....((..(((((.(((((...(((......)))...))))))))))..))....))))..(((((((((((((.(((((.((.....))))))).).))))))).)).))).)))).))---------------------- ( -55.30, z-score = -0.97, R) >consensus ____CCGUGCACCUGCAGUAGCCAAUAAAUGA__AAGAUCAGCGUCUGGAG___CGCUUCCGUGGGAGCGACGAUGGCAGAGCCAGCAACGGAGU__UGGCACUGACGCUAGCAGAAGCAGCGACGGUGCUGGGGGGUAUAAAUACCACCCAAUUUUG ....((((((....)).........................((.((((......((((((....)))))).......)))))).....))))......(((((((.((((.((....)))))).)))))))(((.((((....)))).)))....... (-20.42 = -22.92 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:46 2011