| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 30,301 – 30,407 |
| Length | 106 |
| Max. P | 0.826140 |
| Location | 30,301 – 30,407 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 63.17 |
| Shannon entropy | 0.60948 |
| G+C content | 0.50479 |
| Mean single sequence MFE | -35.22 |
| Consensus MFE | -8.80 |
| Energy contribution | -10.68 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.36 |
| Mean z-score | -2.54 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.82 |
| SVM RNA-class probability | 0.826140 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 30301 106 - 3288761 -CAACUCCGUGGACCAGUUCCAGGCGUCCAUAAACGGAUGAGCGAAUCUUCCCGCUCUCUUAACCAUAGGGAGUUAAAUUUUUCUCGUUUAGGGACCGCUGUCCAAA------------- -........(((((........(((((((.((((((((.(((((........))))))))........(((((........)))))))))).))).)))))))))..------------- ( -31.80, z-score = -1.89, R) >droSim1.chr2h_random 2570743 99 + 3178526 -UGUUUGCGUGUGUCACUUCCAGACGUUCCUAAACGGCG-AGGGAAUCUCCUCGCACCCUUAAGCAAAGAUAGU----UUUUUUCCGCUUAUGUCCCGGGGGACA--------------- -.(((((.(..((((.......))))..).))))).(((-((((....))))))).....(((((.((((....----..))))..)))))(((((....)))))--------------- ( -29.50, z-score = -1.05, R) >droSec1.super_365 4693 99 + 14679 -UGUUUGCGUGUGUCACUUCCAGACGUUCCUAAACGGCG-AGGGAAUCUCCUCGCUCCCUUAAGCAAAGAUAGU----UUUUUUCCGCUUAUGUCCCGGGGGACA--------------- -.(((((.(..((((.......))))..).)))))((((-((((....))))))))....(((((.((((....----..))))..)))))(((((....)))))--------------- ( -29.80, z-score = -1.14, R) >droYak2.chr2h_random 91676 108 + 3774259 CAGCUCCCGUGUGCCAGUUCCACGCGUCCCUAAAUGGAGAAGGGAAUCCACCCACUCUCUUUUGAAAAAGGGAG----UAUUCUUCCAUUAGGGACCGCUGGCCACACCCUU-------- ........(((((((((.....((.((((((((.((((((((((......)))(((((((((....))))))))----).))).)))))))))))))))))).)))))....-------- ( -46.50, z-score = -5.18, R) >droEre2.scaffold_4845 21319188 109 + 22589142 -CAAUUUCGUGUGUUAGUUCCAGGCGUCCCUAAACGAA--AGAGA-----CCCGCUCUCUUAUCCAAAGGGAGUC---UUUUUUUCCAUUAGGGACCGCUGCUGCUUCGGCUACGAACUU -....((((((.((((((..((((.((((((((..(((--(((((-----...((((((((.....)))))))).---))))))))..))))))))).)))..)))..)))))))))... ( -38.50, z-score = -3.43, R) >consensus _CGAUUCCGUGUGUCAGUUCCAGGCGUCCCUAAACGGAG_AGGGAAUCUCCCCGCUCUCUUAAGCAAAGGGAGU____UUUUUUUCGAUUAGGGACCGCUGGACA_______________ .......(((.((.......)).)))...............(((((.......((((((((.....)))))))).......)))))......((((....))))................ ( -8.80 = -10.68 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:45 2011