| Sequence ID | dm3.chr2RHet |
|---|---|
| Location | 19,079 – 19,130 |
| Length | 51 |
| Max. P | 0.602463 |
| Location | 19,079 – 19,130 |
|---|---|
| Length | 51 |
| Sequences | 5 |
| Columns | 55 |
| Reading direction | reverse |
| Mean pairwise identity | 81.82 |
| Shannon entropy | 0.33286 |
| G+C content | 0.41705 |
| Mean single sequence MFE | -9.84 |
| Consensus MFE | -6.98 |
| Energy contribution | -7.22 |
| Covariance contribution | 0.24 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602463 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2RHet 19079 51 - 3288761 UCUGAGUACCUUAUCAAUCGCGAUAACCUUGCUAAG----CUUCAACUUCGAAGU ....((((..(((((......)))))...))))..(----((((......))))) ( -8.10, z-score = -1.07, R) >droSim1.chr2h_random 57318 55 + 3178526 UCUGAGUACAUUAUCAAUCGUGAUAACACUGCUAGGCCCACUUCAACUUCGAAGU (((.((((..((((((....))))))...)))))))...(((((......))))) ( -9.00, z-score = -0.75, R) >droYak2.chrU 2404167 55 - 28119190 UCUGAGUACGCUAUCAAUUGCGAUAGCUUUGCUAAGCCCACUUCAACUUCGAAGU .((.((((.((((((......))))))..)))).))...(((((......))))) ( -13.40, z-score = -1.99, R) >droEre2.scaffold_4929 20881715 53 - 26641161 ACUGAGUACGUUAUCAACUCCGAUAACU--GCUAAGCCAACUUCAACUUCGAAGU .((.((((.((((((......)))))))--))).))...(((((......))))) ( -12.70, z-score = -3.15, R) >droSec1.super_71 23961 52 - 157554 UCUGAGUAAGUUAUCAAUCGCGAUAAUACUGCUAAGCCCACUUCAACUUCGA--- .((.((((.((((((......))))))..)))).))................--- ( -6.00, z-score = -0.14, R) >consensus UCUGAGUACGUUAUCAAUCGCGAUAACACUGCUAAGCCCACUUCAACUUCGAAGU .((.(((..((((((......))))))...))).))....((((......)))). ( -6.98 = -7.22 + 0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:44 2011