| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,984,631 – 22,984,751 |
| Length | 120 |
| Max. P | 0.922049 |
| Location | 22,984,631 – 22,984,751 |
|---|---|
| Length | 120 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 60.24 |
| Shannon entropy | 0.61877 |
| G+C content | 0.52791 |
| Mean single sequence MFE | -35.63 |
| Consensus MFE | -8.91 |
| Energy contribution | -10.72 |
| Covariance contribution | 1.81 |
| Combinations/Pair | 1.55 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.25 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.29 |
| SVM RNA-class probability | 0.922049 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22984631 120 + 23011544 AUCCAGUCAUAUGGAUCUCCACAUGCGCAAGCAGUGGUAUCGCUGAGAUCUCUCCCGUGCAAAAAUGCAUUGAACGACCCGUGCCCUAUAAGCAGGAAAGUCGUCCUCAUCGAGAAUCCA (((((......)))))..((((.(((....)))))))..(((.((((.......(.(((((....))))).).(((((((.(((.......)))))...))))).)))).)))....... ( -35.70, z-score = -2.51, R) >droAna3.scaffold_13278 57932 103 - 130239 -----------------GCCACACCGGCAUUCCGGACUGCCCGCCAAGUUCCGCCUAUGCAAGAAUGCAUUCAGCGAUCCAUGGCCAGUCAACAGGAACCCGGCACUAAGGUUGAAACCA -----------------......((((..((((.(((((...((((.(...(((..(((((....)))))...)))...).)))))))))....)))).))))......(((....))). ( -32.70, z-score = -1.79, R) >droVir3.scaffold_9500 4489 103 - 5668 -----------------GCCACAACGGCAUUCUGGACUGUCAUAAAGGUUCCUCGAAUGCAGGAAUGCAUUGAGGGAACCGUGACCAGUCAACAGGAAUCCAAGACUCAGGCAGAACCCA -----------------(((.....((.(((((.(((((((((...(((((((..((((((....))))))..))))))))))).)))))....)))))))........)))........ ( -37.72, z-score = -3.25, R) >droGri2.scaffold_15040 117235 103 + 162499 -----------------GCCACAAGGGCAUUCCGGGCUAUCACAGAGUCGUCUUGAAUGCAAGAAUGCAUUCAGCGACCCGUGGCCCGUCAACAAAAAUCCAAAACUCAGGUGAAGCCUG -----------------(((.....)))....(((((...(((.(.(((((..((((((((....)))))))))))))).))))))))...................((((.....)))) ( -36.40, z-score = -3.45, R) >consensus _________________GCCACAACGGCAUUCCGGACUAUCACAGAGGUUCCUCCAAUGCAAGAAUGCAUUCAGCGACCCGUGGCCAGUCAACAGGAAUCCAAAACUCAGGUAGAACCCA .................(((.....)))......(((((((((.....(((...(((((((....))))))).)))....)))).))))).............................. ( -8.91 = -10.72 + 1.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:42 2011