| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,971,243 – 22,971,317 |
| Length | 74 |
| Max. P | 0.770415 |
| Location | 22,971,243 – 22,971,317 |
|---|---|
| Length | 74 |
| Sequences | 3 |
| Columns | 74 |
| Reading direction | forward |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.35987 |
| G+C content | 0.45903 |
| Mean single sequence MFE | -20.07 |
| Consensus MFE | -10.78 |
| Energy contribution | -9.90 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.64 |
| SVM RNA-class probability | 0.770415 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22971243 74 + 23011544 GAAAUGUCGGAAGACAGUACGAGGACCGUCUCCUUGACGGUUAGCGGCACCAAAAAAUGUGUCAACUUGAAGAA ....((((....))))...(((((((((((.....)))))))...(((((........)))))..))))..... ( -26.80, z-score = -3.72, R) >droSim1.chr2R 18995269 73 - 19596830 GAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACAGCGACAACAAAACAUGUGUCAACUGCCAGA- ........(((((....((((......))))......((....))((((.((.....))))))..)))))...- ( -16.70, z-score = -1.33, R) >droSec1.super_26 482632 73 - 826190 GAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACAGCGACAACAAAACAUGUGUCAACUGCCAGA- ........(((((....((((......))))......((....))((((.((.....))))))..)))))...- ( -16.70, z-score = -1.33, R) >consensus GAAGUUGAGGCAGACACUGAAGGUACAUUCAACAAAAGCGACAGCGACAACAAAACAUGUGUCAACUGCCAGA_ ........(((((.(.((....((.......))...)).).....((((.((.....))))))..))))).... (-10.78 = -9.90 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:41 2011