| Sequence ID | dm3.chr2L |
|---|---|
| Location | 2,056,773 – 2,056,866 |
| Length | 93 |
| Max. P | 0.948633 |
| Location | 2,056,773 – 2,056,866 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 93.68 |
| Shannon entropy | 0.11050 |
| G+C content | 0.40938 |
| Mean single sequence MFE | -24.78 |
| Consensus MFE | -24.04 |
| Energy contribution | -23.76 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.948633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 2056773 93 + 23011544 UGGAAAAUGGGAAAACGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGCCAAAGUGCAUUUCUCUGAUGUUUUCCAUUUUCGCGACUACUUC----- ..((((((((((((...(((((((..(((........(((((...))))).....))).)))))))....))))))))))))...........----- ( -24.82, z-score = -1.74, R) >droSim1.chr2L 2027043 93 + 22036055 UGGAAAAUGGGAAAACGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGCCAAAGUGCAUUUCUCUGAUGUUUUCCAUUUUCGCAACUACUUC----- ((((((((((((((...(((((((..(((........(((((...))))).....))).)))))))....)))))))))))).))........----- ( -25.02, z-score = -1.98, R) >droSec1.super_14 2003584 92 + 2068291 UGGAAAAUGGGAAAACGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGC-AAAGUGCAUUUCUCUGAUGUUUUCCAUUUUCGCAACUACUUC----- ((((((((((((((...(((((((..(((.......((((((...)))))-)...))).)))))))....)))))))))))).))........----- ( -26.20, z-score = -2.52, R) >droYak2.chr2L 2042850 98 + 22324452 UGGAAAAUGGGAAAACGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGCCAAAGUGCAUUUCUCUGAUGCUUUUCAUUUUCGCAACUAUGGUACUUC ......((((.....((((((((((((((.(((((........(((((....)))))......))))))))))))).))))))...))))........ ( -23.34, z-score = -0.88, R) >droEre2.scaffold_4929 2104899 93 + 26641161 UGGAAAAUGGAAAAGCGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGCCAAAGUGCAUUUCUCUGAUGUUUUCCAUUUUCGCAACUACUUC----- ((((((((((((((.(((((((((..(((........(((((...))))).....))).)))))))..)))))))))))))).))........----- ( -24.52, z-score = -1.66, R) >consensus UGGAAAAUGGGAAAACGAGAGGAAAAGCAAUCAGACUGCAGACCAUUUGCCAAAGUGCAUUUCUCUGAUGUUUUCCAUUUUCGCAACUACUUC_____ ((((((((((((((...(((((((..(((........(((((...))))).....))).)))))))....)))))))))))).))............. (-24.04 = -23.76 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:10:02 2011