Locus 2819

Sequence ID dm3.chr2L
Location 22,909,909 – 22,909,999
Length 90
Max. P 0.645908
window3888

overview

Window 8

Location 22,909,909 – 22,909,999
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 75.93
Shannon entropy 0.39191
G+C content 0.51644
Mean single sequence MFE -22.88
Consensus MFE -14.54
Energy contribution -14.98
Covariance contribution 0.44
Combinations/Pair 1.35
Mean z-score -1.43
Structure conservation index 0.64
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.33
SVM RNA-class probability 0.645908
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr2L 22909909 90 + 23011544
AGGCUGAGAUUCCAGGACAAGACCAUCACCCCACCUAACCGACAUGGAGCAGCUGGAAAUUCGCGUGUGCGUCCUGGAAUAUCUCAUAAC
....((((((((((((((............(((.((..((.....))...)).)))......((....))))))))))..)))))).... ( -26.20, z-score =  -1.54, R)
>droSec1.super_114 53008 90 + 67029
AGGCUGAGAUUCCAGGACAAGACCACCACCCCACAUAACCGACAAGGAGCAGCUGUACCUUCGCGCGAGAGUCCUGGAAUAUUUCAUAAC
....((((((((((((((.....................(((..(((.((....)).))))))(....).))))))))..)))))).... ( -24.10, z-score =  -2.38, R)
>droYak2.chrU 10159671 89 - 28119190
AGGCUGAGGUAUAGGGACAAGACCACCACCCCAAAUAGCCGACAAGGAGCAGCUGGACCAUUGCGCGUGCGUCCCA-AAUACCUCCCAUC
.((..(((((((.(((((....................((.....)).(((((...........)).)))))))).-.)))))))))... ( -25.30, z-score =  -1.00, R)
>droEre2.scaffold_4929 23453517 87 + 26641161
AAGCUGAGGUUCCAGGACAAUACCACCACCCCAUAUAACAUA-AAAGAACCGCUGCACCUUUGCACGUGCGUU-UAGGAUAUC-CAAAUU
.......((.(((.((......))..................-...(((((((((((....)))).))).)))-).)))...)-)..... ( -15.90, z-score =  -0.78, R)
>consensus
AGGCUGAGAUUCCAGGACAAGACCACCACCCCACAUAACCGACAAGGAGCAGCUGGACCUUCGCGCGUGCGUCCUAGAAUAUCUCAUAAC
.....(((((((((((((....................((.....))....((.........))......))))))))..)))))..... (-14.54 = -14.98 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:39 2011