| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,774,693 – 22,774,754 |
| Length | 61 |
| Max. P | 0.858180 |
| Location | 22,774,693 – 22,774,754 |
|---|---|
| Length | 61 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 88.17 |
| Shannon entropy | 0.16292 |
| G+C content | 0.45408 |
| Mean single sequence MFE | -16.87 |
| Consensus MFE | -13.13 |
| Energy contribution | -12.80 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.25 |
| Structure conservation index | 0.78 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.858180 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22774693 61 - 23011544 UACCCGUCUCCUCGUCAGGAGUUUCGAAGCCAACUGGUUUGGGU-GUUUCCCAAUUUAAUUA (((((..(((((....))))).....(((((....)))))))))-)................ ( -16.20, z-score = -1.86, R) >droSec1.super_59 95477 62 + 165940 UACACAUCUCCUCUUCAGGAGUUUUCGAGCCAACUGGUUCGGGUGGUUUCACAAUUUAUUUA ..(((..(((((....)))))...(((((((....))))))))))................. ( -17.70, z-score = -3.44, R) >droSim1.chr2h_random 2467574 62 - 3178526 UACACGUCUCCCCGUCAGGAGUUUUCGAGCCAACUGGUUCGGGUGGUUUCCCAAUUUAUUUA ..(((..((((......))))...(((((((....))))))))))................. ( -16.70, z-score = -1.44, R) >consensus UACACGUCUCCUCGUCAGGAGUUUUCGAGCCAACUGGUUCGGGUGGUUUCCCAAUUUAUUUA .......((((......))))..((((((((....))))))))................... (-13.13 = -12.80 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:37 2011