| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,770,310 – 22,770,361 |
| Length | 51 |
| Max. P | 0.500000 |
| Location | 22,770,310 – 22,770,361 |
|---|---|
| Length | 51 |
| Sequences | 4 |
| Columns | 61 |
| Reading direction | forward |
| Mean pairwise identity | 62.15 |
| Shannon entropy | 0.60515 |
| G+C content | 0.63712 |
| Mean single sequence MFE | -20.18 |
| Consensus MFE | -12.11 |
| Energy contribution | -12.18 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.33 |
| Mean z-score | -0.35 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr2L 22770310 51 + 23011544 GCCGUACGAUACACGGCAGCGCCCCUCGGUCGGUUGGGCGGGAGGUGUAGC---------- (((((.......))))).(((((.((((.((....)).)))).)))))...---------- ( -21.30, z-score = -0.72, R) >droYak2.chr2h_random 1354901 51 + 3774259 GCCGUAAGAUUUACGGCGGCGCCCCUUGGUUUGUUGGGUAGGAGGUGUGGA---------- ((((((.....)))))).(((((.((((.((....)).)))).)))))...---------- ( -18.80, z-score = -1.51, R) >dp4.Unknown_group_219 10320 61 + 21192 ACCGUGCGUCAUGCGGCAGCGCCCCUCGGUCGGUUGGGCGGGAGGGGGGCUGCGUUUUGCC .....(((....(((.((((.((((((.(((.....)))..)))))).)))))))..))). ( -28.60, z-score = -0.36, R) >droVir3.scaffold_12929 465655 60 + 558845 GUCGUUCGUUACACGACUGCGUCCCUCAUUCGGUUUGGCGGGAGUUGGAUAGUACAUUGA- (((((.......)))))(((((((..(.((((......)))).)..)))).)))......- ( -12.00, z-score = 1.22, R) >consensus GCCGUACGAUACACGGCAGCGCCCCUCGGUCGGUUGGGCGGGAGGUGGAGA__________ (((((.......)))))..((((.((((.((....)).)))).)))).............. (-12.11 = -12.18 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:36 2011