| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,674,998 – 22,675,080 |
| Length | 82 |
| Max. P | 0.560511 |
| Location | 22,674,998 – 22,675,080 |
|---|---|
| Length | 82 |
| Sequences | 3 |
| Columns | 82 |
| Reading direction | forward |
| Mean pairwise identity | 62.20 |
| Shannon entropy | 0.53339 |
| G+C content | 0.43821 |
| Mean single sequence MFE | -19.88 |
| Consensus MFE | -8.62 |
| Energy contribution | -7.63 |
| Covariance contribution | -0.99 |
| Combinations/Pair | 1.41 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.43 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.560511 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22674998 82 + 23011544 AAUGUCUCUCCAAUUAUGCUAGUCGCAUGAUGACGUCGCUUAUUACGAAGUGGCGUGAGAUGGAUGUGGAGGAAAUAGCUGU ....((.((((((((((((.....))))))).(((((((((......)))))))))..........)))))))......... ( -25.80, z-score = -2.18, R) >droVir3.scaffold_12958 2267120 82 + 3547706 AAGGUCUCUCGAUAUACGCAAGCCGUUUAGUGACGUCACUCGUAACAACAUUGCGAGACAUGACCACUCACACAAUUGCUGU ...(((....)))....((((.......((((..(((((((((((.....)))))))...)))))))).......))))... ( -17.34, z-score = -0.22, R) >droYak2.chrU 19365892 70 + 28119190 AAUGCCUUUCCAAUUACGCUAGUCGCAUGAUGACCUUACUUAUUACGAAAUGGCGUGAUAUGAAUGUGGA------------ ....((.(((..(((((((((.(((..((((((......)))))))))..)))))))))..)))...)).------------ ( -16.50, z-score = -2.05, R) >consensus AAUGUCUCUCCAAUUACGCUAGUCGCAUGAUGACGUCACUUAUUACGAAAUGGCGUGACAUGAAUGUGGA___AAU_GCUGU ........((...((((((((....(.((((((......)))))).)...))))))))...))................... ( -8.62 = -7.63 + -0.99)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:35 2011