| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,644,198 – 22,644,258 |
| Length | 60 |
| Max. P | 0.857898 |
| Location | 22,644,198 – 22,644,258 |
|---|---|
| Length | 60 |
| Sequences | 4 |
| Columns | 71 |
| Reading direction | reverse |
| Mean pairwise identity | 64.63 |
| Shannon entropy | 0.53107 |
| G+C content | 0.41332 |
| Mean single sequence MFE | -12.98 |
| Consensus MFE | -7.69 |
| Energy contribution | -6.88 |
| Covariance contribution | -0.81 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.94 |
| SVM RNA-class probability | 0.857898 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22644198 60 - 23011544 UCCUCAGCAUUAGCUGAGCAAUGUAUUUUU-----------GAUUUUCGGCUAUAGAGUCUGCUCUUGCCU ..((((((....))))))............-----------.......(((...((((....)))).))). ( -18.10, z-score = -2.30, R) >droSec1.super_90 62479 60 - 127117 UCCCCAGCACUAGCUGAGCCAUGUAUUUUU-----------AAUUUUCGGGUAUAGCGUCAGCUCUUGCCC ......(((..((((((((..(((((((..-----------.......))))))))).))))))..))).. ( -14.60, z-score = -1.62, R) >droSim1.chr2h_random 3098056 71 - 3178526 UCCCCAGCACUAGCUGAGCCAUGUAUUUUUUUCAAUUUUUCAAUUUUCGGGUAUAGCGUCAGCUCUUGCCC ....((((....))))................................(((((.(((....)))..))))) ( -14.60, z-score = -1.86, R) >droWil1.scaffold_180699 552275 60 + 2593675 ACAACAGCGUUACUGAUGCGGUUUAAGUUU-----------AAUUCUCAUCUGAAGUUAUUUUUCUUUCUU ..(((.(((((...)))))...........-----------..(((......))))))............. ( -4.60, z-score = 0.92, R) >consensus UCCCCAGCACUAGCUGAGCCAUGUAUUUUU___________AAUUUUCGGCUAUAGCGUCAGCUCUUGCCC ......(((..((((((....(((((((....................)))))))...))))))..))).. ( -7.69 = -6.88 + -0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:35 2011