| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,573,991 – 22,574,046 |
| Length | 55 |
| Max. P | 0.671506 |
| Location | 22,573,991 – 22,574,046 |
|---|---|
| Length | 55 |
| Sequences | 3 |
| Columns | 58 |
| Reading direction | forward |
| Mean pairwise identity | 60.82 |
| Shannon entropy | 0.54113 |
| G+C content | 0.49756 |
| Mean single sequence MFE | -14.13 |
| Consensus MFE | -5.68 |
| Energy contribution | -5.47 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.40 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.671506 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22573991 55 + 23011544 UGCAAUAACUGUGGGGGCAAUCACACAGCAAACUACAGAGGCUGUCCAAUCUACA--- .((.....((((((..((.........))...))))))..)).............--- ( -9.90, z-score = 0.18, R) >droMoj3.scaffold_6540 7276203 51 + 34148556 UGCGUCAACUGUAAGGGAAACCAUACAGCAAACGCCAAAGUAUGUCCAAUC------- .((((...(((((.((....)).)))))...))))................------- ( -15.80, z-score = -4.10, R) >triCas2.chrUn_161 13349 58 - 19111 UGUGCCAAUUGUAAUGGCCCCCACACGGCCAAUUACAGAGGCUGUCCGCAGUUCCCCA .........((((((((((.......)))).))))))(..((((....))))..)... ( -16.70, z-score = -1.28, R) >consensus UGCGACAACUGUAAGGGCAACCACACAGCAAACUACAGAGGCUGUCCAAUCU_C____ ........(((((.((....)).))))).............................. ( -5.68 = -5.47 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:34 2011