| Sequence ID | dm3.chr2L |
|---|---|
| Location | 22,525,751 – 22,525,813 |
| Length | 62 |
| Max. P | 0.643149 |
| Location | 22,525,751 – 22,525,813 |
|---|---|
| Length | 62 |
| Sequences | 3 |
| Columns | 62 |
| Reading direction | reverse |
| Mean pairwise identity | 56.18 |
| Shannon entropy | 0.57764 |
| G+C content | 0.40084 |
| Mean single sequence MFE | -8.65 |
| Consensus MFE | -5.62 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.50 |
| Mean z-score | -0.47 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.643149 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 22525751 62 - 23011544 AUAUCAUCGUUAUAUAUAAUAAACAAAACAAAAAACUGUAUACGUAGAAAAGAGCUGUUCGA ...((..(((.(((((....................))))))))..)).............. ( -1.45, z-score = 1.73, R) >droSec1.super_62 47034 54 - 174595 ------UCAUUAUCUUUGUUAUAUAGACAGAUCAGGUGCGCGAGCAUCUACGCUCUCCCC-- ------........((((((.....))))))..((((((....))))))...........-- ( -12.70, z-score = -1.77, R) >droSim1.chr2h_random 2091919 54 - 3178526 ------UCAUUAUCUUCGUUAUAUAGACAGAUCAGGUGCGCGAGCAUCUACGCUCUCCCC-- ------...................((.((...((((((....))))))...)).))...-- ( -11.80, z-score = -1.38, R) >consensus ______UCAUUAUCUUUGUUAUAUAGACAGAUCAGGUGCGCGAGCAUCUACGCUCUCCCC__ .................................((((((....))))))............. ( -5.62 = -5.40 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:58:28 2011